A Machine Learning-Based Risk Score for Prediction of Infective Endocarditis Among Patients With Staphylococcus aureus Bacteremia-The SABIER Score

J Infect Dis. 2024 Sep 23;230(3):606-613. doi: 10.1093/infdis/jiae080.

Abstract

Background: Early risk assessment is needed to stratify Staphylococcus aureus infective endocarditis (SA-IE) risk among patients with S. aureus bacteremia (SAB) to guide clinical management. The objective of the current study was to develop a novel risk score that is independent of subjective clinical judgment and can be used early, at the time of blood culture positivity.

Methods: We conducted a retrospective big data analysis from territory-wide electronic data and included hospitalized patients with SAB between 2009 and 2019. We applied a random forest risk scoring model to select variables from an array of parameters, according to the statistical importance in predicting SA-IE outcome. The data were divided into derivation and validation cohorts. The areas under the curve of the receiver operating characteristic (AUCROCs) were determined.

Results: We identified 15 741 SAB patients, among them 658 (4.18%) had SA-IE. The AUCROC was 0.74 (95%CI 0.70-0.76), with a negative predictive value of 0.980 (95%CI 0.977-0.983). The four most discriminatory features were age, history of infective endocarditis, valvular heart disease, and community onset.

Conclusions: We developed a novel risk score with performance comparable with existing scores, which can be used at the time of SAB and prior to subjective clinical judgment.

Keywords: Staphylococcus aureus; bloodstream infections; infective endocarditis; machine learning; prediction model.

MeSH terms

  • Adult
  • Aged
  • Bacteremia* / diagnosis
  • Bacteremia* / microbiology
  • Endocarditis, Bacterial* / diagnosis
  • Endocarditis, Bacterial* / microbiology
  • Female
  • Humans
  • Machine Learning*
  • Male
  • Middle Aged
  • ROC Curve
  • Retrospective Studies
  • Risk Assessment / methods
  • Risk Factors
  • Staphylococcal Infections* / diagnosis
  • Staphylococcal Infections* / microbiology
  • Staphylococcus aureus* / isolation & purification