Association of the polymorphisms rs179008 (TLR7), rs2004640 (IRF5), rs1800795 (IL-6) and rs2280788 (CCL5) with systemic lupus erythematosus in women of Mayan ethnicity from Yucatan

Nucleosides Nucleotides Nucleic Acids. 2024;43(11):1316-1332. doi: 10.1080/15257770.2024.2325438. Epub 2024 Mar 8.

Abstract

Introduction: IFN-α is the main cytokine in SLE, and single nucleotide polymorphisms (SNP) in different genes could induce it. Aim: To determine the association of rs2004640 (IRF5), rs179008 (TLR7), rs1800795 (IL-6) and rs2280788 (CCL5) with SLE in Mexican women with Mayan ethnicity. Methods: DNA and RNA were isolated from the peripheral blood of 110 patients and 200 healthy control subjects. SNP genotyping and gene expression analysis of IRF5, TLR7, IL-6 and IFN-α were determined by real-time PCR and analyzed with SNP Stat, Stata 10.1 and Graph Pad Prism v5. Results: rs2004640, rs179008, and rs1800795 in both groups were according to Hardy-Weinberg equilibrium. Risk alleles rs179008T and rs2004640T frequencies were higher in controls (p = 0.015 and p = 0.028, respectively), whereas rs179008A frequency was higher in patients (p = 0.015). Allelic combination AGT frequency was higher in patients (p = 0.001). IL-6 rs1800795C > G and CCL5 rs2280788G > C frequencies did not show significant differences (p > 0.05), being rs2280788G (CCL5) monomorphic in controls. SLE patients showed higher TLR7, IRF5, IL6, and IFN-α mRNA levels. IRF5 expression was higher in SLE patients homozygous for rs2004640T (IRF5). Conclusion: This work showed the contribution of TLR7 and IRF5 in SLE pathogenesis in Mayan females from Yucatan.

Keywords: IFN-α; IRF5; Mayan; Systemic lupus erythematosus; TLR7; Yucatecan.

MeSH terms

  • Adult
  • Case-Control Studies
  • Chemokine CCL5* / genetics
  • Female
  • Gene Frequency
  • Genetic Predisposition to Disease
  • Genotype
  • Humans
  • Indians, North American
  • Interferon Regulatory Factors* / genetics
  • Interleukin-6* / blood
  • Interleukin-6* / genetics
  • Lupus Erythematosus, Systemic* / genetics
  • Mexico
  • Middle Aged
  • Polymorphism, Single Nucleotide
  • Toll-Like Receptor 7* / genetics

Substances

  • CCL5 protein, human
  • Chemokine CCL5
  • IL6 protein, human
  • Interferon Regulatory Factors
  • Interleukin-6
  • IRF5 protein, human
  • TLR7 protein, human
  • Toll-Like Receptor 7

Supplementary concepts

  • Yucatec Maya people