Synthesis, in vitro, and in silico studies of morpholine-based thiosemicarbazones as ectonucleotide pyrophosphatase/phosphodiesterase-1 and -3 inhibitors

Int J Biol Macromol. 2024 May;266(Pt 2):131068. doi: 10.1016/j.ijbiomac.2024.131068. Epub 2024 Mar 24.

Abstract

An extensive range of new biologically active morpholine based thiosemicarbazones derivatives 3a-r were synthesized, characterized by spectral techniques and evaluated as inhibitors of ENPP isozymes. Most of the novel thiosemicarbazones exhibit potent inhibition towards NPP1 and NPP3 isozymes. Compound 3 h was potent inhibitor of NPP1 with IC50 value of 0.55 ± 0.02. However, the most powerful inhibitor of NPP3 was 3e with an IC50 value of 0.24 ± 0.02. Furthermore, Lineweaver-Burk plot for compound 3 h against NPP1 and for compound 3e against NPP3 was devised through enzymes kinetics studies. Molecular docking and in silico studies was also done for analysis of interaction pattern of all newly synthesized compounds. The results were further validated by molecular dynamic (MD) simulation where the stability of conformational transformation of the best protein-ligand complex (3e) were justified on the basis of RMSD and RMSF analysis.

Keywords: Ectonucleotide pyrophosphatase; Molecular docking; Thiosemicarbazones.

MeSH terms

  • Computer Simulation
  • Humans
  • Kinetics
  • Ligands
  • Molecular Docking Simulation*
  • Molecular Dynamics Simulation*
  • Morpholines* / chemical synthesis
  • Morpholines* / chemistry
  • Morpholines* / pharmacology
  • Phosphodiesterase Inhibitors / chemical synthesis
  • Phosphodiesterase Inhibitors / chemistry
  • Phosphodiesterase Inhibitors / pharmacology
  • Phosphoric Diester Hydrolases* / chemistry
  • Phosphoric Diester Hydrolases* / metabolism
  • Pyrophosphatases* / antagonists & inhibitors
  • Pyrophosphatases* / chemistry
  • Pyrophosphatases* / metabolism
  • Structure-Activity Relationship
  • Thiosemicarbazones* / chemical synthesis
  • Thiosemicarbazones* / chemistry
  • Thiosemicarbazones* / pharmacology

Substances

  • Morpholines
  • Phosphoric Diester Hydrolases
  • Pyrophosphatases
  • Thiosemicarbazones
  • ectonucleotide pyrophosphatase phosphodiesterase 1
  • morpholine
  • Phosphodiesterase Inhibitors
  • Ligands