Targeted genotyping for recurring variants in cancer susceptibility genes in non-Ashkenazi Jewish patients with breast cancer diagnosed ≥50 years

Cancer. 2024 Aug 15;130(16):2763-2769. doi: 10.1002/cncr.35329. Epub 2024 Apr 17.

Abstract

Purpose: Several recurring pathogenic variants (PVs) in BRCA1/BRCA2 and additional cancer susceptibility genes are described in the ethnically diverse Israeli population. Since 2019, testing for these recurring PVs is reimbursed unselectively for all patients with breast cancer (BC) in Israel. The aim was to evaluate the yield of genotyping for these PVs in non-Ashkenazi Jewish (AJ) patients with BC diagnosed ≥age 50 years.

Methods: Clinical and genotyping data of all patients with BC undergoing oncogenetic counseling at the Oncology Institute at Sheba Medical Center from June 2017 to December 2023 were reviewed.

Results: Of 2706 patients with BC (mean age at diagnosis, 54 years; range, 20-92 years) counseled, 515 patients of non-AJ (all four grandparents) descent, diagnosed ≥age 50 years of age were genotyped, 55 with triple-negative BC (TNBC) and 460 with non-TNBC. One of the recurring PVs in BRCA1/BRCA2 were detected in 12.7% (7/55) of TNBC patients and 0.65% (3/460) of non-TNBC. One patient with non-TNBC had PMS2 PV. Low-penetrance variants were found in 2.5% of genotyped TNBC and in 3.7% of patients with non-TNBC, including CHEK2 c.499G>A (n = 3), APC c.3920T > A (n = 4), and heterozygous MUTYH c.1187G>A (n = 5). Following first-pass genotyping, 146 patients performed multigene panel testing, none carried a BRCA1/BRCA2 PV, and only 5/127 non-TNBC (3.9%) harbored PVs in CHEK2 (n = 2, c.846+1G>C and c.592+3A>T), ATM c.103C>T (n = 2), and NBN c.966C>G (n = 1).

Conclusions: The observed low rates of PV detection in non-AJ non-TNBC cases ≥age 50 years at diagnosis, mostly for clinically insignificant variants, questions the justification of unselected genotyping in this subset of patients.

Keywords: BRCA1 BRCA2; breast cancer; cancer susceptibility genes; non‐Ashkenazi Jewish; recurring pathogenic variants.

MeSH terms

  • Adenomatous Polyposis Coli Protein / genetics
  • Adult
  • Aged
  • Aged, 80 and over
  • Ataxia Telangiectasia Mutated Proteins / genetics
  • BRCA1 Protein / genetics
  • BRCA2 Protein* / genetics
  • Breast Neoplasms* / ethnology
  • Breast Neoplasms* / genetics
  • Checkpoint Kinase 2* / genetics
  • DNA Glycosylases / genetics
  • Female
  • Genetic Predisposition to Disease*
  • Genetic Testing / methods
  • Genotype
  • Humans
  • Israel / epidemiology
  • Jews* / genetics
  • Middle Aged
  • Mismatch Repair Endonuclease PMS2 / genetics
  • Triple Negative Breast Neoplasms / ethnology
  • Triple Negative Breast Neoplasms / genetics
  • Young Adult

Substances

  • Checkpoint Kinase 2
  • CHEK2 protein, human
  • BRCA2 Protein
  • BRCA1 Protein
  • BRCA2 protein, human
  • BRCA1 protein, human
  • Ataxia Telangiectasia Mutated Proteins
  • ATM protein, human
  • Mismatch Repair Endonuclease PMS2
  • PMS2 protein, human
  • Adenomatous Polyposis Coli Protein
  • DNA Glycosylases
  • APC protein, human
  • mutY adenine glycosylase