Transcriptomic Signatures of Progression to Tuberculosis Disease Among Close Contacts in Brazil

J Infect Dis. 2024 Dec 16;230(6):e1355-e1365. doi: 10.1093/infdis/jiae237.

Abstract

Background: Approximately 5% of people infected with Mycobacterium tuberculosis progress to tuberculosis (TB) disease without preventive therapy. There is a need for a prognostic test to identify those at highest risk of incident TB so that therapy can be targeted. We evaluated host blood transcriptomic signatures for progression to TB disease.

Methods: Close contacts (≥4 hours of exposure per week) of adult patients with culture-confirmed pulmonary TB were enrolled in Brazil. Investigation for incident, microbiologically confirmed, or clinically diagnosed pulmonary or extrapulmonary TB disease through 24 months of follow-up was symptom triggered. Twenty previously validated blood TB transcriptomic signatures were measured at baseline by real-time quantitative polymerase chain reaction. Prognostic performance for incident TB was tested by receiver operating characteristic curve analysis at 6, 9, 12, and 24 months of follow-up.

Results: Between June 2015 and June 2019, 1854 close contacts were enrolled. Twenty-five progressed to incident TB, of whom 13 had microbiologically confirmed disease. Baseline transcriptomic signature scores were measured in 1789 close contacts. Prognostic performance for all signatures was best within 6 months of diagnosis. Seven signatures (Gliddon4, Suliman4, Roe3, Roe1, Penn-Nicholson6, Francisco2, and Rajan5) met the minimum World Health Organization target product profile for a prognostic test through 6 months and 3 signatures (Gliddon4, Rajan5, and Duffy9) through 9 months. None met the target product profile threshold through ≥12 months of follow-up.

Conclusions: Blood transcriptomic signatures may be useful for predicting TB risk within 9 months of measurement among TB-exposed contacts to target preventive therapy administration.

Keywords: biomarkers; blood; prognostic; transcriptomic; tuberculosis.

MeSH terms

  • Adolescent
  • Adult
  • Brazil / epidemiology
  • Contact Tracing
  • Disease Progression*
  • Female
  • Gene Expression Profiling
  • Humans
  • Male
  • Middle Aged
  • Mycobacterium tuberculosis* / genetics
  • Prognosis
  • Transcriptome*
  • Tuberculosis / epidemiology
  • Tuberculosis / microbiology
  • Tuberculosis, Pulmonary / blood
  • Tuberculosis, Pulmonary / epidemiology
  • Tuberculosis, Pulmonary / microbiology
  • Young Adult