ABA-mediated regulation of rice grain quality and seed dormancy via the NF-YB1-SLRL2-bHLH144 Module

Nat Commun. 2024 May 27;15(1):4493. doi: 10.1038/s41467-024-48760-w.

Abstract

Abscisic acid (ABA) plays a crucial role in promoting plant stress resistance and seed dormancy. However, how ABA regulates rice quality remains unclear. This study identifies a key transcription factor SLR1-like2 (SLRL2), which mediates the ABA-regulated amylose content (AC) of rice. Mechanistically, SLRL2 interacts with NF-YB1 to co-regulate Wx, a determinant of AC and rice quality. In contrast to SLR1, SLRL2 is ABA inducible but insensitive to GA. In addition, SLRL2 exhibits DNA-binding activity and directly regulates the expression of Wx, bHLH144 and MFT2. SLRL2 competes with NF-YC12 for interaction with NF-YB1. NF-YB1 also directly represses SLRL2 transcription. Genetic validation supports that SLRL2 functions downstream of NF-YB1 and bHLH144 in regulating rice AC. Thus, an NF-YB1-SLRL2-bHLH144 regulatory module is successfully revealed. Furthermore, SLRL2 regulates rice dormancy by modulating the expression of MFT2. In conclusion, this study revealed an ABA-responsive regulatory cascade that functions in both rice quality and seed dormancy.

MeSH terms

  • Abscisic Acid* / metabolism
  • Amylose / metabolism
  • Basic Helix-Loop-Helix Transcription Factors / genetics
  • Basic Helix-Loop-Helix Transcription Factors / metabolism
  • CCAAT-Binding Factor / genetics
  • CCAAT-Binding Factor / metabolism
  • Edible Grain / genetics
  • Edible Grain / metabolism
  • Gene Expression Regulation, Plant*
  • Oryza* / genetics
  • Oryza* / metabolism
  • Plant Dormancy* / genetics
  • Plant Proteins* / genetics
  • Plant Proteins* / metabolism
  • Plants, Genetically Modified
  • Seeds / growth & development
  • Seeds / metabolism
  • Transcription Factors / genetics
  • Transcription Factors / metabolism

Substances

  • Abscisic Acid
  • Plant Proteins
  • Transcription Factors
  • CCAAT-Binding Factor
  • Basic Helix-Loop-Helix Transcription Factors
  • Amylose
  • nuclear factor Y