Chromosome-level genome assembly and annotation of the cold-water species Ophiura sarsii

Sci Data. 2024 May 30;11(1):560. doi: 10.1038/s41597-024-03412-y.

Abstract

The cold-water species Ophiura sarsii, a brittle star, is a key echinoderm in the Arctic continental shelf region, highly sensitive to climate change. However, the absence of a high-quality genome has hindered a thorough understanding of its adaptive evolution. In this study, we reported the first chromosome-level genome assembly of O. sarsii. The genome assembly totalled 1.57 Gb, encompassing 19 chromosomes with a GC content of 37.11% and a scaffold N50 length of 78.03 Mb. The Benchmarking Universal Single-Copy Orthologs (BUSCO) assessment yielded a completeness estimate of 93.5% for this assembly. We predicted a total of 27,099 protein-coding genes, with 25,079 functionally annotated. The genome was comprised of 58.09% transposable elements. This chromosome-level genome of O. sarsii contributes to our understanding of the origin and evolution of marine organisms.

Publication types

  • Dataset

MeSH terms

  • Animals
  • Base Composition
  • Chromosomes*
  • DNA Transposable Elements
  • Echinodermata* / genetics
  • Genome*
  • Molecular Sequence Annotation

Substances

  • DNA Transposable Elements