Design, Synthesis, and Evaluation of BCL-2 Targeting PROTACs

Chemistry. 2024 Aug 12;30(45):e202400430. doi: 10.1002/chem.202400430. Epub 2024 Jul 25.

Abstract

BCL-2, a member of the BCL-2 protein family, is an antiapoptotic factor that regulates the intrinsic pathway of apoptosis. Due to its aberrant activity, it is frequently implicated in haematopoietic cancers and represents an attractive target for the development of therapeutics that antagonize its activity. A selective BCL-2 inhibitor, venetoclax, was approved for treating chronic lymphocytic leukaemia, acute myeloid leukemia, and other haematologic malignancies, validating BCL-2 as an anticancer target. Since then, alternative therapeutic approaches to modulate the activity of BCL-2 have been explored, such as antibody-drug conjugates and proteolysis-targeting chimeras. Despite numerous research groups focusing on developing degraders of BCL-2 family member proteins, selective BCL-2 PROTACs remain elusive, as disclosed compounds only show dual BCL-xL/BCL-2 degradation. Herein, we report our efforts to develop BCL-2 degraders by incorporating two BCL-2 binding moieties into chimeric compounds that aim to hijack one of three E3 ligases: CRBN, VHL, and IAPs. Even though our project did not result in obtaining a potent and selective BCL-2 PROTAC, our research will aid in understanding the narrow chemical space of BCL-2 degraders.

Keywords: BCL-2 protein; apoptosis; proteasome; proteolysis-targeting chimeras; targeted protein degradation.

MeSH terms

  • Adaptor Proteins, Signal Transducing / metabolism
  • Antineoplastic Agents / chemical synthesis
  • Antineoplastic Agents / chemistry
  • Antineoplastic Agents / pharmacology
  • Apoptosis / drug effects
  • Bridged Bicyclo Compounds, Heterocyclic / chemical synthesis
  • Bridged Bicyclo Compounds, Heterocyclic / chemistry
  • Bridged Bicyclo Compounds, Heterocyclic / pharmacology
  • Drug Design*
  • Humans
  • Proteolysis Targeting Chimera
  • Proteolysis* / drug effects
  • Proto-Oncogene Proteins c-bcl-2* / antagonists & inhibitors
  • Proto-Oncogene Proteins c-bcl-2* / metabolism
  • Sulfonamides / chemical synthesis
  • Sulfonamides / chemistry
  • Sulfonamides / pharmacology
  • Ubiquitin-Protein Ligases* / metabolism
  • Von Hippel-Lindau Tumor Suppressor Protein / metabolism

Substances

  • Proto-Oncogene Proteins c-bcl-2
  • Ubiquitin-Protein Ligases
  • Bridged Bicyclo Compounds, Heterocyclic
  • venetoclax
  • Antineoplastic Agents
  • Sulfonamides
  • Von Hippel-Lindau Tumor Suppressor Protein
  • Adaptor Proteins, Signal Transducing
  • CRBN protein, human
  • VHL protein, human
  • BCL2 protein, human
  • Proteolysis Targeting Chimera