Species delimitation 4.0: integrative taxonomy meets artificial intelligence

Trends Ecol Evol. 2024 Aug;39(8):771-784. doi: 10.1016/j.tree.2023.11.002. Epub 2024 Jun 6.

Abstract

Although species are central units for biological research, recent findings in genomics are raising awareness that what we call species can be ill-founded entities due to solely morphology-based, regional species descriptions. This particularly applies to groups characterized by intricate evolutionary processes such as hybridization, polyploidy, or asexuality. Here, challenges of current integrative taxonomy (genetics/genomics + morphology + ecology, etc.) become apparent: different favored species concepts, lack of universal characters/markers, missing appropriate analytical tools for intricate evolutionary processes, and highly subjective ranking and fusion of datasets. Now, integrative taxonomy combined with artificial intelligence under a unified species concept can enable automated feature learning and data integration, and thus reduce subjectivity in species delimitation. This approach will likely accelerate revising and unraveling eukaryotic biodiversity.

Keywords: integrative taxon-omics; machine learning; reticulate evolution; species delimitation; taxonomically complex groups.

Publication types

  • Review

MeSH terms

  • Artificial Intelligence*
  • Biodiversity
  • Classification* / methods
  • Genomics