FLI1 is associated with regulation of DNA methylation and megakaryocytic differentiation in FPDMM caused by a RUNX1 transactivation domain mutation

Sci Rep. 2024 Jun 18;14(1):14080. doi: 10.1038/s41598-024-64829-4.

Abstract

Familial platelet disorder with associated myeloid malignancies (FPDMM) is an autosomal dominant disease caused by heterozygous germline mutations in RUNX1. It is characterized by thrombocytopenia, platelet dysfunction, and a predisposition to hematological malignancies. Although FPDMM is a precursor for diseases involving abnormal DNA methylation, the DNA methylation status in FPDMM remains unknown, largely due to a lack of animal models and challenges in obtaining patient-derived samples. Here, using genome editing techniques, we established two lines of human induced pluripotent stem cells (iPSCs) with different FPDMM-mimicking heterozygous RUNX1 mutations. These iPSCs showed defective differentiation of hematopoietic progenitor cells (HPCs) and megakaryocytes (Mks), consistent with FPDMM. The FPDMM-mimicking HPCs showed DNA methylation patterns distinct from those of wild-type HPCs, with hypermethylated regions showing the enrichment of ETS transcription factor (TF) motifs. We found that the expression of FLI1, an ETS family member, was significantly downregulated in FPDMM-mimicking HPCs with a RUNX1 transactivation domain (TAD) mutation. We demonstrated that FLI1 promoted binding-site-directed DNA demethylation, and that overexpression of FLI1 restored their megakaryocytic differentiation efficiency and hypermethylation status. These findings suggest that FLI1 plays a crucial role in regulating DNA methylation and correcting defective megakaryocytic differentiation in FPDMM-mimicking HPCs with a RUNX1 TAD mutation.

Keywords: FLI1; DNA demethylation; DNA methylation analysis; Familial platelet disorder with associated myeloid malignancies; Megakaryocytic differentiation.

MeSH terms

  • Blood Coagulation Disorders, Inherited
  • Blood Platelet Disorders / genetics
  • Blood Platelet Disorders / metabolism
  • Blood Platelet Disorders / pathology
  • Cell Differentiation* / genetics
  • Core Binding Factor Alpha 2 Subunit* / genetics
  • Core Binding Factor Alpha 2 Subunit* / metabolism
  • DNA Methylation*
  • Hematopoietic Stem Cells / cytology
  • Hematopoietic Stem Cells / metabolism
  • Humans
  • Induced Pluripotent Stem Cells* / cytology
  • Induced Pluripotent Stem Cells* / metabolism
  • Leukemia, Myeloid, Acute
  • Megakaryocytes* / metabolism
  • Mutation*
  • Proto-Oncogene Protein c-fli-1* / genetics
  • Proto-Oncogene Protein c-fli-1* / metabolism
  • Transcriptional Activation

Substances

  • Core Binding Factor Alpha 2 Subunit
  • Proto-Oncogene Protein c-fli-1
  • RUNX1 protein, human
  • FLI1 protein, human

Supplementary concepts

  • Platelet Disorder, Familial, with Associated Myeloid Malignancy