Bowman-Birk Inhibitor Mutants of Soybean Generated by CRISPR-Cas9 Reveal Drastic Reductions in Trypsin and Chymotrypsin Inhibitor Activities

Int J Mol Sci. 2024 May 21;25(11):5578. doi: 10.3390/ijms25115578.

Abstract

Despite the high quality of soybean protein, raw soybeans and soybean meal cannot be directly included in animal feed mixtures due to the presence of Kunitz (KTi) and Bowman-Birk protease inhibitors (BBis), which reduces animal productivity. Heat treatment can substantially inactivate trypsin and chymotrypsin inhibitors (BBis), but such treatment is energy-intensive, adds expense, and negatively impacts the quality of seed proteins. As an alternative approach, we have employed CRISPR/Cas9 gene editing to create mutations in BBi genes to drastically lower the protease inhibitor content in soybean seed. Agrobacterium-mediated transformation was used to generate several stable transgenic soybean events. These independent CRISPR/Cas9 events were examined in comparison to wild-type plants using Sanger sequencing, proteomic analysis, trypsin/chymotrypsin inhibitor activity assays, and qRT-PCR. Collectively, our results demonstrate the creation of an allelic series of loss-of-function mutations affecting the major BBi gene in soybean. Mutations in two of the highly expressed seed-specific BBi genes lead to substantial reductions in both trypsin and chymotrypsin inhibitor activities.

Keywords: Bowman–Birk inhibitor; CRISPR-Cas9 enabled mutagenesis; Glycine max (L. (Merr)); antinutritional factors; soybean.

MeSH terms

  • CRISPR-Cas Systems
  • Chymotrypsin / genetics
  • Chymotrypsin / metabolism
  • Gene Editing* / methods
  • Glycine max* / genetics
  • Glycine max* / metabolism
  • Mutation
  • Plant Proteins / genetics
  • Plant Proteins / metabolism
  • Plants, Genetically Modified / genetics
  • Seeds / genetics
  • Seeds / metabolism
  • Trypsin / chemistry
  • Trypsin / genetics
  • Trypsin / metabolism
  • Trypsin Inhibitor, Bowman-Birk Soybean* / genetics
  • Trypsin Inhibitor, Bowman-Birk Soybean* / metabolism
  • Trypsin Inhibitors / metabolism

Substances

  • Chymotrypsin
  • Plant Proteins
  • Trypsin
  • Trypsin Inhibitor, Bowman-Birk Soybean
  • Trypsin Inhibitors