Control of mitophagy initiation and progression by the TBK1 adaptors NAP1 and SINTBAD

Nat Struct Mol Biol. 2024 Nov;31(11):1717-1731. doi: 10.1038/s41594-024-01338-y. Epub 2024 Jun 25.

Abstract

Mitophagy preserves overall mitochondrial fitness by selectively targeting damaged mitochondria for degradation. The regulatory mechanisms that prevent PTEN-induced putative kinase 1 (PINK1) and E3 ubiquitin ligase Parkin (PINK1/Parkin)-dependent mitophagy and other selective autophagy pathways from overreacting while ensuring swift progression once initiated are largely elusive. Here, we demonstrate how the TBK1 (TANK-binding kinase 1) adaptors NAP1 (NAK-associated protein 1) and SINTBAD (similar to NAP1 TBK1 adaptor) restrict the initiation of OPTN (optineurin)-driven mitophagy by competing with OPTN for TBK1. Conversely, they promote the progression of nuclear dot protein 52 (NDP52)-driven mitophagy by recruiting TBK1 to NDP52 and stabilizing its interaction with FIP200. Notably, OPTN emerges as the primary recruiter of TBK1 during mitophagy initiation, which in return boosts NDP52-mediated mitophagy. Our results thus define NAP1 and SINTBAD as cargo receptor rheostats, elevating the threshold for mitophagy initiation by OPTN while promoting the progression of the pathway once set in motion by supporting NDP52. These findings shed light on the cellular strategy to prevent pathway hyperactivity while still ensuring efficient progression.

MeSH terms

  • Adaptor Proteins, Signal Transducing / genetics
  • Adaptor Proteins, Signal Transducing / metabolism
  • Autophagy-Related Proteins / genetics
  • Autophagy-Related Proteins / metabolism
  • Carrier Proteins / genetics
  • Carrier Proteins / metabolism
  • Cell Cycle Proteins* / genetics
  • Cell Cycle Proteins* / metabolism
  • HEK293 Cells
  • HeLa Cells
  • Humans
  • Intracellular Signaling Peptides and Proteins
  • Membrane Transport Proteins* / genetics
  • Membrane Transport Proteins* / metabolism
  • Mitochondria / metabolism
  • Mitophagy*
  • Neoplasm Proteins
  • Nuclear Proteins / metabolism
  • Protein Serine-Threonine Kinases* / metabolism
  • Transcription Factor TFIIIA* / genetics
  • Transcription Factor TFIIIA* / metabolism
  • Ubiquitin-Protein Ligases / genetics
  • Ubiquitin-Protein Ligases / metabolism

Substances

  • Protein Serine-Threonine Kinases
  • OPTN protein, human
  • TBK1 protein, human
  • CALCOCO2 protein, human
  • Membrane Transport Proteins
  • Cell Cycle Proteins
  • Transcription Factor TFIIIA
  • Nuclear Proteins
  • TAX1BP1 protein, human
  • Autophagy-Related Proteins
  • TBKBP1 protein, human
  • RB1CC1 protein, human
  • Adaptor Proteins, Signal Transducing
  • Ubiquitin-Protein Ligases
  • Carrier Proteins
  • Neoplasm Proteins
  • Intracellular Signaling Peptides and Proteins