The crystal structure of the N-terminal domain of the backbone pilin LrpA reveals a new closure-and-twist motion for assembling dynamic pili in Ligilactobacillus ruminis

Acta Crystallogr D Struct Biol. 2024 Jul 1;80(Pt 7):474-492. doi: 10.1107/S2059798324005114. Epub 2024 Jun 27.

Abstract

Sortase-dependent pili are long surface appendages that mediate attachment, colonization and biofilm formation in certain genera and species of Gram-positive bacteria. Ligilactobacillus ruminis is an autochthonous gut commensal that relies on sortase-dependent LrpCBA pili for host adherence and persistence. X-ray crystal structure snapshots of the backbone pilin LrpA were captured in two atypical bent conformations leading to a zigzag morphology in the LrpCBA pilus structure. Small-angle X-ray scattering and structural analysis revealed that LrpA also adopts the typical linear conformation, resulting in an elongated pilus morphology. Various conformational analyses and biophysical experiments helped to demonstrate that a hinge region located at the end of the flexible N-terminal domain of LrpA facilitates a new closure-and-twist motion for assembling dynamic pili during the assembly process and host attachment. Further, the incongruent combination of flexible domain-driven conformational dynamics and rigid isopeptide bond-driven stability observed in the LrpCBA pilus might also extend to the sortase-dependent pili of other bacteria colonizing a host.

Keywords: Ligilactobacillus ruminis; LrpCBA pilus; flexible N-terminal domain; gut bacteria; isopeptide bonds; pilins; sortase-dependent pili.

MeSH terms

  • Bacillaceae
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism
  • Crystallography, X-Ray
  • Fimbriae Proteins* / chemistry
  • Fimbriae Proteins* / metabolism
  • Fimbriae, Bacterial* / chemistry
  • Models, Molecular
  • Protein Conformation
  • Protein Domains

Substances

  • Fimbriae Proteins
  • Bacterial Proteins