Protein SUMOylation promotes cAMP-independent EPAC1 activation

Cell Mol Life Sci. 2024 Jul 4;81(1):283. doi: 10.1007/s00018-024-05315-y.

Abstract

Protein SUMOylation is a prevalent stress-response posttranslational modification crucial for maintaining cellular homeostasis. Herein, we report that protein SUMOylation modulates cellular signaling mediated by cAMP, an ancient and universal stress-response second messenger. We identify K561 as a primary SUMOylation site in exchange protein directly activated by cAMP (EPAC1) via site-specific mapping of SUMOylation using mass spectrometry. Sequence and site-directed mutagenesis analyses reveal that a functional SUMO-interacting motif in EPAC1 is required for the binding of SUMO-conjugating enzyme UBC9, formation of EPAC1 nuclear condensate, and EPAC1 cellular SUMOylation. Heat shock-induced SUMO modification of EPAC1 promotes Rap1/2 activation in a cAMP-independent manner. Structural modeling and molecular dynamics simulation studies demonstrate that SUMO substituent on K561 of EPAC1 promotes Rap1 interaction by increasing the buried surface area between the SUMOylated receptor and its effector. Our studies identify a functional SUMOylation site in EPAC1 and unveil a novel mechanism in which SUMOylation of EPAC1 leads to its autonomous activation. The findings of SUMOylation-mediated activation of EPAC1 not only provide new insights into our understanding of cellular regulation of EPAC1 but also will open up a new field of experimentation concerning the cross-talk between cAMP/EPAC1 signaling and protein SUMOylation, two major cellular stress response pathways, during cellular homeostasis.

Keywords: Biomolecular condensate; Heat shock; Molecular dynamics; SUMO; SUMO-interacting motif.

MeSH terms

  • Amino Acid Sequence
  • Cyclic AMP* / metabolism
  • Guanine Nucleotide Exchange Factors* / chemistry
  • Guanine Nucleotide Exchange Factors* / genetics
  • Guanine Nucleotide Exchange Factors* / metabolism
  • HEK293 Cells
  • Heat-Shock Response
  • Humans
  • Molecular Dynamics Simulation
  • Protein Binding
  • Shelterin Complex / metabolism
  • Signal Transduction
  • Sumoylation*
  • Telomere-Binding Proteins / metabolism
  • Ubiquitin-Conjugating Enzyme UBC9
  • Ubiquitin-Conjugating Enzymes* / genetics
  • Ubiquitin-Conjugating Enzymes* / metabolism
  • rap GTP-Binding Proteins / genetics
  • rap GTP-Binding Proteins / metabolism
  • rap1 GTP-Binding Proteins* / genetics
  • rap1 GTP-Binding Proteins* / metabolism

Substances

  • Guanine Nucleotide Exchange Factors
  • RAPGEF3 protein, human
  • Cyclic AMP
  • Ubiquitin-Conjugating Enzymes
  • rap1 GTP-Binding Proteins
  • Ubiquitin-Conjugating Enzyme UBC9
  • Shelterin Complex
  • Telomere-Binding Proteins
  • rap GTP-Binding Proteins
  • TERF2IP protein, human
  • RAP1B protein, human