Q48K mutation in the type IB nitroreductase NrmA is responsible for nitrofurantoin resistance in Enterococcus faecium

Int J Antimicrob Agents. 2024 Sep;64(3):107277. doi: 10.1016/j.ijantimicag.2024.107277. Epub 2024 Jul 19.

Abstract

Objectives: Nitrofurantoin is recommended as first-line therapy for the optimal treatment of uncomplicated urinary tract infections (UTIs) caused by enterococci and Escherichia coli. However, the mechanisms of nitrofurantoin resistance in enterococci have not been elucidated. This study aimed to investigate the mechanisms of nitrofurantoin resistance in E. faecium, focusing on the role of the nitroreductase NrmA.

Methods: Enterococcus strains isolated from the urinary tract samples were collected and were tested for nitrofurantoin susceptibility. Potential genes associated with nitrofurantoin resistance were screened in the NCBI nucleotide database and by polymerase chain reaction (PCR). Complementation assays and enzyme kinetic tests were performed to assess the impact of the Q48K mutation in NrmA on nitrofurantoin resistance.

Results: Of the 128 E. faecium isolates tested, 59 (46.1%) were resistant to nitrofurantoin. Analysis revealed the presence of a type IB nitroreductase, designated NrmA, in all E. faecium strains studied, shared 18.7% sequence identity with nitroreductase NfsB in E. coli. Different from NrmA in nitrofurantoin-susceptible E. faecium, nitrofurantoin-resistant strains had a single amino acid substitution, i.e., a lysine instead of a glutamine at position 48 (Q48K mutation). Complementation assays of nitrofurantoin-resistant E. faecium HS17-112 showed that the nitrofurantoin minimal inhibitory concentration of the complemented strain HS17-112: pIB166-nrmA (wild type [WT]) decreased from 128 mg/L to 4 mg/L. Compared with NrmA (WT), NrmA (Q48K) showed significantly reduced catalytic efficiency, with a kcat/Km value decreasing from 0.122 µM-1 s-1 to 0.000042 µM-1 s-1.

Conclusion: The Q48K mutation in nitroreductase NrmA is responsible for nitrofurantoin resistance in E. faecium.

Keywords: Enterococcus faecium; Nitrofurantoin resistance; Nitroreductase; NrmA.

MeSH terms

  • Anti-Bacterial Agents / pharmacology
  • Anti-Infective Agents, Urinary / pharmacology
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Drug Resistance, Bacterial* / genetics
  • Enterococcus faecium* / drug effects
  • Enterococcus faecium* / enzymology
  • Enterococcus faecium* / genetics
  • Escherichia coli Proteins
  • Gram-Positive Bacterial Infections / drug therapy
  • Gram-Positive Bacterial Infections / microbiology
  • Humans
  • Microbial Sensitivity Tests
  • Mutation
  • Nitrofurantoin* / pharmacology
  • Nitroreductases* / genetics
  • Nitroreductases* / metabolism
  • Urinary Tract Infections / microbiology

Substances

  • Anti-Bacterial Agents
  • Anti-Infective Agents, Urinary
  • Bacterial Proteins
  • Escherichia coli Proteins
  • NfsB protein, E coli
  • Nitrofurantoin
  • Nitroreductases