DNA-encoded probe-based assay for profiling plant kinase activities

PNAS Nexus. 2024 Jul 19;3(7):pgae281. doi: 10.1093/pnasnexus/pgae281. eCollection 2024 Jul.

Abstract

Elucidating kinase-substrate relationships is pivotal for deciphering cellular signaling mechanisms, yet it remains challenging due to the complexity of kinase networks. Herein, we report the development of a versatile DNA-based kinase assay platform for high-throughput profiling of plant protein kinase activities and substrate preferences. Our approach employs DNA-linked peptide substrates, facilitating quantitative and specific kinase activity detection through next-generation DNA sequencing. Leveraging DNA barcodes as quantitative readouts, our approach establishes a high-throughput, sensitive, and specific platform for dissecting kinase-substrate networks in plants, representing a powerful tool for elucidating signaling mechanisms in plants.

Keywords: DNA-linked probe; NGS; and kinase activity; qPCR.