Structural basis for activity switching in polymerases determining the fate of let-7 pre-miRNAs

Nat Struct Mol Biol. 2024 Sep;31(9):1426-1438. doi: 10.1038/s41594-024-01357-9. Epub 2024 Jul 25.

Abstract

Tumor-suppressor let-7 pre-microRNAs (miRNAs) are regulated by terminal uridylyltransferases TUT7 and TUT4 that either promote let-7 maturation by adding a single uridine nucleotide to the pre-miRNA 3' end or mark them for degradation by the addition of multiple uridines. Oligo-uridylation is increased in cells by enhanced TUT7/4 expression and especially by the RNA-binding pluripotency factor LIN28A. Using cryogenic electron microscopy, we captured high-resolution structures of active forms of TUT7 alone, of TUT7 plus pre-miRNA and of both TUT7 and TUT4 bound with pre-miRNA and LIN28A. Our structures reveal that pre-miRNAs engage the enzymes in fundamentally different ways depending on the presence of LIN28A, which clamps them onto the TUTs to enable processive 3' oligo-uridylation. This study reveals the molecular basis for mono- versus oligo-uridylation by TUT7/4, as determined by the presence of LIN28A, and thus their mechanism of action in the regulation of cell fate and in cancer.

MeSH terms

  • Cryoelectron Microscopy*
  • DNA-Binding Proteins / chemistry
  • DNA-Binding Proteins / metabolism
  • Humans
  • MicroRNAs* / chemistry
  • MicroRNAs* / genetics
  • MicroRNAs* / metabolism
  • Models, Molecular
  • Nucleotidyltransferases / chemistry
  • Nucleotidyltransferases / metabolism
  • Protein Conformation
  • RNA Nucleotidyltransferases / chemistry
  • RNA Nucleotidyltransferases / genetics
  • RNA Nucleotidyltransferases / metabolism
  • RNA Precursors / metabolism
  • RNA-Binding Proteins* / chemistry
  • RNA-Binding Proteins* / metabolism

Substances

  • mirnlet7 microRNA, human
  • MicroRNAs
  • RNA-Binding Proteins
  • TUT7 protein, human
  • TUT4 protein, human
  • Lin28A protein, human
  • RNA Nucleotidyltransferases
  • RNA Precursors
  • DNA-Binding Proteins
  • Nucleotidyltransferases