Driver mutation subtypes involve with differentiated immunophenotypes influencing pancreatic cancer outcomes

Cancer Lett. 2024 Sep 1:599:217134. doi: 10.1016/j.canlet.2024.217134. Epub 2024 Jul 31.

Abstract

Despite many studies focusing on the prognostic biomarkers in pancreatic adenocarcinomas (PAADs), there is ill-informed about the relationships between their genomic features and immune characteristics. Herein, we deeply investigated the involvement of major driver mutation subtypes with immunophenotypes impacting PAAD outcomes. Based on public data analyses of RNA expression-based immune subtypes in PAAD, in contrast to KRAS G12D & TP53 co-mutant patients with poor outcomes, the best immune subtype C3 (inflammatory) characterized by high Th1/Th2 ratio was relatively enriched in KRASnon-G12DTP53wt patients with better survival, whereas the inferior subtype C2 (IFN-γ dominant) with low Th1/Th2 ratio was more common in the former than in the latter. Moreover, contrary to the highly immunosuppressive microenvironment (high Treg, high ratio of Treg to tumor-specific CD4+ T cell) in KRASG12DTP53mut patients, KRASG12VTP53wt individuals exhibited an inflamed context profiled by multiplex immunohistochemistry. It could be responsible for their outstanding survival advantage over others in postsurgical PAAD patients receiving adjuvant chemotherapy as shown by our cohort. Together, KRASG12VTP53wt may be a promising biomarker for prognostic evaluation and screening certain candidates with PAAD to get desirable survival benefit from adjuvant chemotherapy.

Keywords: Immunophenotypes; KRAS G12V; Neoantigen; Pancreatic adenocarcinoma; Tumor-specific CD4(+) T cells.

MeSH terms

  • Adenocarcinoma / genetics
  • Adenocarcinoma / immunology
  • Adenocarcinoma / mortality
  • Adenocarcinoma / pathology
  • Biomarkers, Tumor* / genetics
  • Female
  • Humans
  • Immunophenotyping*
  • Male
  • Mutation*
  • Pancreatic Neoplasms* / genetics
  • Pancreatic Neoplasms* / immunology
  • Pancreatic Neoplasms* / mortality
  • Pancreatic Neoplasms* / pathology
  • Prognosis
  • Proto-Oncogene Proteins p21(ras)* / genetics
  • Tumor Microenvironment* / immunology
  • Tumor Suppressor Protein p53* / genetics

Substances

  • Proto-Oncogene Proteins p21(ras)
  • KRAS protein, human
  • Tumor Suppressor Protein p53
  • Biomarkers, Tumor
  • TP53 protein, human