Decoding Seafood: Multi-Marker Metabarcoding for Authenticating Processed Seafood

Foods. 2024 Jul 27;13(15):2382. doi: 10.3390/foods13152382.

Abstract

Given the recognized nutritional value of fish and shifting consumer lifestyles, processed seafood has become increasingly prevalent, comprising a significant portion of global food production. Although current European Union labeling regulations do not require species declaration for these products, food business operators often voluntarily provide this information on ingredient lists. Next Generation Sequencing (NGS) approaches are currently the most effective methods for verifying the accuracy of species declarations on processed seafood labels. This study examined the species composition of 20 processed seafood products, each labeled as containing a single species, using two DNA metabarcoding markers targeting the mitochondrial cytochrome c oxidase I (COI) and 16S rRNA genes. The combined use of these markers revealed that the majority of the products contained multiple species. Furthermore, two products were found to be mislabeled, as the declared species were not detected. These findings underscore that NGS is a robust technique that could be adopted to support routine food industry activities and official control programs, thereby enhancing the 'From Boat to Plate' strategy and combating fraudulent practices in the complex fisheries supply chain.

Keywords: NGS; dual-marker; food official controls; multi-species products; primers; seafood traceability.

Grants and funding

This work was funded by the scientific collaboration agreement between the Department of Veterinary Medicine of the University of Bari—Food Safety Unit and the Ministry of Agricultural, Food and Forestry Policies (MiPAAF)—Department of the Central Inspectorate for the Protection of Quality and Repression of agri-food product fraud—ICQRF, CUP H67G22000060001.