Shifting redox reaction equilibria on demand using an orthogonal redox cofactor

Nat Chem Biol. 2024 Nov;20(11):1535-1546. doi: 10.1038/s41589-024-01702-5. Epub 2024 Aug 13.

Abstract

Nature's two redox cofactors, nicotinamide adenine dinucleotide (NAD+) and nicotinamide adenine dinucleotide phosphate (NADP+), are held at different reduction potentials, driving catabolism and anabolism in opposite directions. In biomanufacturing, there is a need to flexibly control redox reaction direction decoupled from catabolism and anabolism. We established nicotinamide mononucleotide (NMN+) as a noncanonical cofactor orthogonal to NAD(P)+. Here we present the development of Nox Ortho, a reduced NMN+ (NMNH)-specific oxidase, that completes the toolkit to modulate NMNH:NMN+ ratio together with an NMN+-specific glucose dehydrogenase (GDH Ortho). The design principle discovered from Nox Ortho engineering and modeling is facilely translated onto six different enzymes to create NMN(H)-orthogonal biocatalysts with a consistent ~103-106-fold cofactor specificity switch from NAD(P)+ to NMN+. We assemble these enzymes to produce stereo-pure 2,3-butanediol in cell-free systems and in Escherichia coli, enabled by NMN(H)'s distinct redox ratio firmly set by its designated driving forces, decoupled from both NAD(H) and NADP(H).

MeSH terms

  • Biocatalysis
  • Escherichia coli* / enzymology
  • Escherichia coli* / metabolism
  • Glucose 1-Dehydrogenase / metabolism
  • Models, Molecular
  • NAD / chemistry
  • NAD / metabolism
  • NADP* / chemistry
  • NADP* / metabolism
  • Nicotinamide Mononucleotide / chemistry
  • Nicotinamide Mononucleotide / metabolism
  • Oxidation-Reduction*
  • Oxidoreductases / chemistry
  • Oxidoreductases / metabolism

Substances

  • NADP
  • NAD
  • Nicotinamide Mononucleotide
  • Oxidoreductases
  • Glucose 1-Dehydrogenase