Mapping Endocytic Vesicular Acidification with a pH-Responsive DNA Nanomachine

Chembiochem. 2024 Nov 18;25(22):e202400363. doi: 10.1002/cbic.202400363. Epub 2024 Oct 24.

Abstract

Mapping the endocytic vesicular acidification process is of prior importance to better understand the health and pathological processes of cells. Herein, by integrating a pH-sensitive i-motif and a pair of fluorescence resonance energy transfer (FRET) into a tetrahedral DNA framework (TDF), we develop a pH-responsive DNA nanomachine, allowing for efficient sensing of pH from 7.0 to 5.5 via the pH-triggered spatial proximity modulation of FRET. The inheriting endo-lysosome-targeting ability of TDF enables spatiotemporal tracking of endocytic vesicle acidification during the endosomal maturation process. Analysis of pH-dependent FRET response at single fluorescent spot level reveals the significant difference of endocytic vesicular acidification between normal and cancer cells. The performance of pH-responsive DNA nanomachine underlines its potential for studies on vesicle acidification-related pathologies as a universal platform.

Keywords: Cell imaging; DNA nanotechnology; Endosome maturation; I-motif; Vesicle acidification.

MeSH terms

  • DNA* / chemistry
  • Endocytosis
  • Endosomes / metabolism
  • Fluorescence Resonance Energy Transfer*
  • Fluorescent Dyes / chemistry
  • HeLa Cells
  • Humans
  • Hydrogen-Ion Concentration
  • Nanostructures / chemistry

Substances

  • DNA
  • Fluorescent Dyes