Palmitoylation of ULK1 by ZDHHC13 plays a crucial role in autophagy

Nat Commun. 2024 Aug 21;15(1):7194. doi: 10.1038/s41467-024-51402-w.

Abstract

Autophagy is a highly conserved process from yeast to mammals in which intracellular materials are engulfed by a double-membrane organelle called autophagosome and degrading materials by fusing with the lysosome. The process of autophagy is regulated by sequential recruitment and function of autophagy-related (Atg) proteins. Genetic hierarchical analyses show that the ULK1 complex comprised of ULK1-FIP200-ATG13-ATG101 translocating from the cytosol to autophagosome formation sites as a most upstream ATG factor; this translocation is critical in autophagy initiation. However, how this translocation occurs remains unclear. Here, we show that ULK1 is palmitoylated by palmitoyltransferase ZDHHC13 and translocated to the autophagosome formation site upon autophagy induction. We find that the ULK1 palmitoylation is required for autophagy initiation. Moreover, the ULK1 palmitoylated enhances the phosphorylation of ATG14L, which is required for activating PI3-Kinase and producing phosphatidylinositol 3-phosphate, one of the autophagosome membrane's lipids. Our results reveal how the most upstream ULK1 complex translocates to the autophagosome formation sites during autophagy.

MeSH terms

  • Acyltransferases* / genetics
  • Acyltransferases* / metabolism
  • Adaptor Proteins, Signal Transducing / genetics
  • Adaptor Proteins, Signal Transducing / metabolism
  • Adaptor Proteins, Vesicular Transport / genetics
  • Adaptor Proteins, Vesicular Transport / metabolism
  • Animals
  • Autophagosomes* / metabolism
  • Autophagy* / physiology
  • Autophagy-Related Protein-1 Homolog* / genetics
  • Autophagy-Related Protein-1 Homolog* / metabolism
  • Autophagy-Related Proteins* / genetics
  • Autophagy-Related Proteins* / metabolism
  • HEK293 Cells
  • Humans
  • Intracellular Signaling Peptides and Proteins* / genetics
  • Intracellular Signaling Peptides and Proteins* / metabolism
  • Lipoylation*
  • Phosphatidylinositol Phosphates / metabolism
  • Phosphorylation
  • Protein Transport
  • Vesicular Transport Proteins

Substances

  • Autophagy-Related Protein-1 Homolog
  • Autophagy-Related Proteins
  • ULK1 protein, human
  • Intracellular Signaling Peptides and Proteins
  • Acyltransferases
  • Phosphatidylinositol Phosphates
  • ATG14 protein, human
  • Adaptor Proteins, Signal Transducing
  • phosphatidylinositol 3-phosphate
  • ATG13 protein, human
  • Adaptor Proteins, Vesicular Transport
  • ATG101 protein, human
  • RB1CC1 protein, human
  • Vesicular Transport Proteins