The RNA-binding protein EIF4A3 promotes axon development by direct control of the cytoskeleton

Cell Rep. 2024 Sep 24;43(9):114666. doi: 10.1016/j.celrep.2024.114666. Epub 2024 Aug 24.

Abstract

The exon junction complex (EJC), nucleated by EIF4A3, is indispensable for mRNA fate and function throughout eukaryotes. We discover that EIF4A3 directly controls microtubules, independent of RNA, which is critical for neural wiring. While neuronal survival in the developing mouse cerebral cortex depends upon an intact EJC, axonal tract development requires only Eif4a3. Using human cortical organoids, we show that EIF4A3 disease mutations also impair neuronal growth, highlighting conserved functions relevant for neurodevelopmental pathology. Live imaging of growing neurons shows that EIF4A3 is essential for microtubule dynamics. Employing biochemistry and competition experiments, we demonstrate that EIF4A3 directly binds to microtubules, mutually exclusive of the EJC. Finally, in vitro reconstitution assays and rescue experiments demonstrate that EIF4A3 is sufficient to promote microtubule polymerization and that EIF4A3-microtubule association is a major contributor to axon growth. This reveals a fundamental mechanism by which neurons re-utilize core gene expression machinery to directly control the cytoskeleton.

Keywords: CP: Cell biology; CP: Neuroscience; EIF4A3; Eif4a3; RNA; axon growth; axonal tracts; cortical development; cortical organoids; exon junction complex; microtubules; neural development; neuronal maturation.

MeSH terms

  • Animals
  • Axons* / metabolism
  • Cytoskeleton* / metabolism
  • DEAD-box RNA Helicases
  • Eukaryotic Initiation Factor-4A* / genetics
  • Eukaryotic Initiation Factor-4A* / metabolism
  • Humans
  • Mice
  • Microtubules* / metabolism
  • Neurons / metabolism
  • Protein Binding
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism

Substances

  • Eukaryotic Initiation Factor-4A
  • EIF4A3 protein, human
  • RNA-Binding Proteins
  • DEAD-box RNA Helicases