Genomic evidence that Ornithinicoccus soli Jiang et al. 2020 is a later heterotypic synonym of Segeticoccus rhizosphaerae Lee and Whang 2020

Int J Syst Evol Microbiol. 2024 Aug;74(8):006503. doi: 10.1099/ijsem.0.006503.

Abstract

The genus Segeticoccus includes only one species with validly published name, Segeticoccus rhizosphaerae. The type strain Segeticoccus rhizosphaerae YJ01T was isolated from soil in Korea, while Ornithinicoccus soli XNB-1T was isolated from soil in China. Both strains share similar phenotypic and chemotaxonomic characteristics, including predominant menaquinone MK-8(H4) and major polar lipids diphosphatidylglycerol and phosphatidylglycerol. Whole genome sequences revealed a DNA G+C content of 70.1 mol% for both strains and 100% similarity in their 16S rRNA gene sequences. Phylogenetic analysis showed they form a distinct cluster separate from other genera. Genomic comparisons showed average nucleotide identity and digital DNA-DNA hybridization values of 99.16 and 94.2%, respectively, indicating they represent a single species. Based on this genomic evidence, Ornithinicoccus soli Jiang et al. 2020 is proposed to be a later heterotypic synonym of Segeticoccus rhizosphaerae Lee and Whang 2020.

Keywords: Ornithinicoccus soli; Segeticoccus rhizosphaerae; heterotypic synonym.

MeSH terms

  • Bacterial Typing Techniques*
  • Base Composition*
  • China
  • DNA, Bacterial* / genetics
  • Fatty Acids
  • Genome, Bacterial
  • Nucleic Acid Hybridization*
  • Phylogeny*
  • RNA, Ribosomal, 16S* / genetics
  • Republic of Korea
  • Sequence Analysis, DNA*
  • Soil Microbiology*
  • Vitamin K 2 / analogs & derivatives
  • Whole Genome Sequencing

Substances

  • RNA, Ribosomal, 16S
  • DNA, Bacterial
  • Fatty Acids
  • Vitamin K 2