From non-coding RNAs to histone modification: The epigenetic mechanisms in tomato fruit ripening and quality regulation

Plant Physiol Biochem. 2024 Oct:215:109070. doi: 10.1016/j.plaphy.2024.109070. Epub 2024 Aug 24.

Abstract

Ripening is one of the most important stages of fruit development and determines the fruit quality. Various factors play a role in this process, with epigenetic mechanisms emerging as important players. Epigenetic regulation encompasses DNA methylation, histone modifications and variants, chromatin remodeling, RNA modifications, and non-coding RNAs. Over the past decade, studies using tomato as a model have made considerable progress in understanding the impact of epigenetic regulation on fleshy fruit ripening and quality. In this paper, we provide an overview of recent advancements in the epigenetic regulation of tomato fruit ripening and quality regulation, focusing on three main mechanisms: DNA/RNA modifications, non-coding RNAs, and histone modifications. Furthermore, we highlight the unresolved issues and challenges within this research field, offering perspectives for future investigations to drive agricultural innovation.

Keywords: DNA methylation; Epigenetic regulation; Fruit quality; Non-coding RNA; Tomato fruit ripening.

Publication types

  • Review

MeSH terms

  • DNA Methylation / genetics
  • Epigenesis, Genetic*
  • Fruit* / genetics
  • Fruit* / growth & development
  • Fruit* / metabolism
  • Gene Expression Regulation, Plant
  • Histone Code
  • Histones / genetics
  • Histones / metabolism
  • RNA, Untranslated* / genetics
  • RNA, Untranslated* / metabolism
  • Solanum lycopersicum* / genetics
  • Solanum lycopersicum* / growth & development
  • Solanum lycopersicum* / metabolism

Substances

  • RNA, Untranslated
  • Histones