Structural basis of Frizzled 4 in recognition of Dishevelled 2 unveils mechanism of WNT signaling activation

Nat Commun. 2024 Sep 2;15(1):7644. doi: 10.1038/s41467-024-52174-z.

Abstract

WNT signaling is fundamental in development and homeostasis, but how the Frizzled receptors (FZDs) propagate signaling remains enigmatic. Here, we present the cryo-EM structure of FZD4 engaged with the DEP domain of Dishevelled 2 (DVL2), a key WNT transducer. We uncover a distinct binding mode where the DEP finger-loop inserts into the FZD4 cavity to form a hydrophobic interface. FZD4 intracellular loop 2 (ICL2) additionally anchors the complex through polar contacts. Mutagenesis validates the structural observations. The DEP interface is highly conserved in FZDs, indicating a universal mechanism by which FZDs engage with DVLs. We further reveal that DEP mimics G-protein/β-arrestin/GRK to recognize an active conformation of receptor, expanding current GPCR engagement models. Finally, we identify a distinct FZD4 dimerization interface. Our findings delineate the molecular determinants governing FZD/DVL assembly and propagation of WNT signaling, providing long-sought answers underlying WNT signal transduction.

MeSH terms

  • Cryoelectron Microscopy
  • Dishevelled Proteins* / chemistry
  • Dishevelled Proteins* / genetics
  • Dishevelled Proteins* / metabolism
  • Frizzled Receptors* / chemistry
  • Frizzled Receptors* / genetics
  • Frizzled Receptors* / metabolism
  • HEK293 Cells
  • Humans
  • Models, Molecular
  • Protein Binding
  • Protein Domains
  • Wnt Signaling Pathway*

Substances

  • Frizzled Receptors
  • Dishevelled Proteins
  • FZD4 protein, human
  • DVL2 protein, human