Blocking the PD-1 signal transduction by occupying the phosphorylated ITSM recognition site of SHP-2

Sci China Life Sci. 2025 Jan;68(1):189-203. doi: 10.1007/s11427-024-2706-2. Epub 2024 Aug 29.

Abstract

Targeting the PD-1/PD-L1 axis with small-molecular inhibitors is a promising approach for immunotherapy. Here, we identify a natural pentacyclic triterpenoid, Pygenic Acid A (PA), as a PD-1 signaling inhibitor. PA exerts anti-tumor activity in hPD-1 knock-in C57BL/6 mice and enhances effector functions of T cells to promote immune responses by disrupting the PD-1 signaling transduction. Furthermore, we identify SHP-2 as the direct molecular target of PA for inhibiting the PD-1 signaling transduction. Subsequently, mechanistic studies suggest that PA binds to a new druggable site in the phosphorylated PD-1 ITSM recognition site of SHP-2, inhibiting the recruitment of SHP-2 by PD-1. Taken together, our findings demonstrate that PA has a potential application in cancer immunotherapy and occupying the phosphorylated ITSM recognition site of SHP-2 may serve as an alternative strategy to develop PD-1 signaling inhibitors. In addition, our success in target recognition provides a paradigm of target identification and confirmation for natural products.

Keywords: SH2 domain-containing protein-tyrosine phosphatase-2; immunoreceptor tyrosine-based switch motif; programmed death-1; pygenic acid A; site recognition; target identification.

MeSH terms

  • Animals
  • Cell Line, Tumor
  • Humans
  • Mice
  • Mice, Inbred C57BL*
  • Phosphorylation
  • Programmed Cell Death 1 Receptor* / antagonists & inhibitors
  • Programmed Cell Death 1 Receptor* / metabolism
  • Protein Tyrosine Phosphatase, Non-Receptor Type 11* / antagonists & inhibitors
  • Protein Tyrosine Phosphatase, Non-Receptor Type 11* / genetics
  • Protein Tyrosine Phosphatase, Non-Receptor Type 11* / metabolism
  • Signal Transduction*

Substances

  • Programmed Cell Death 1 Receptor
  • Protein Tyrosine Phosphatase, Non-Receptor Type 11
  • Pdcd1 protein, mouse
  • PTPN11 protein, human