Unveiling the solution structure of a DNA duplex with continuous silver-modified Watson-Crick base pairs

Nat Commun. 2024 Sep 5;15(1):7763. doi: 10.1038/s41467-024-51876-8.

Abstract

The challenge of transforming organized DNA structures into their metallized counterparts persists in the scientific field. In this context, utilizing DNA molecules modified with 7-deazapurine, provides a transformative solution. In this study, we present the solution structure of a DNA duplex that can be transformed into its metallized equivalent while retaining the natural base pairing arrangement through the creation of silver-modified Watson-Crick base pairs. Unlike previously documented X-ray structures, our research demonstrates the feasibility of preserving the intrinsic DNA self-assembly while incorporating AgI into the double helix, illustrating that the binding of silver does not disrupt the canonical base-pairing organization. Moreover, in our case, the uninterrupted AgI chain deviates from forming conventional straight linear chains; instead, it adheres to a helical arrangement dictated by the underlying DNA structure. This research challenges conventional assumptions and opens the door to precisely design structures based on the organization of highly stable Ag-DNA assemblies.

MeSH terms

  • Base Pairing*
  • DNA* / chemistry
  • Models, Molecular
  • Nucleic Acid Conformation*
  • Silver* / chemistry
  • Solutions

Substances

  • Silver
  • DNA
  • Solutions