Lys716 in the transmembrane domain of yeast mitofusin Fzo1 modulates anchoring and fusion

Structure. 2024 Nov 7;32(11):1997-2012.e7. doi: 10.1016/j.str.2024.08.017. Epub 2024 Sep 18.

Abstract

Outer mitochondrial membrane fusion, a vital cellular process, is mediated by mitofusins. However, the underlying molecular mechanism remains elusive. We have performed extensive multiscale molecular dynamics simulations to predict a model of the transmembrane (TM) domain of the yeast mitofusin Fzo1. Coarse-grained simulations of the two TM domain helices, TM1 and TM2, reveal a stable interface, which is controlled by the charge status of residue Lys716. Atomistic replica-exchange simulations further tune our model, which is confirmed by a remarkable agreement with an independent AlphaFold2 (AF2) prediction of Fzo1 in complex with its fusion partner Ugo1. Furthermore, the presence of the TM domain destabilizes the membrane, even more if Lys716 is charged, which can be an asset for initiating fusion. The functional role of Lys716 was confirmed with yeast experiments, which show that mutating Lys716 to a hydrophobic residue prevents mitochondrial fusion.

Keywords: Fzo1; Lys716; mitofusin; molecular modeling; outer mitochondrial membrane fusion; transmembrane domain.

MeSH terms

  • GTP Phosphohydrolases / chemistry
  • GTP Phosphohydrolases / genetics
  • GTP Phosphohydrolases / metabolism
  • Lysine* / chemistry
  • Lysine* / metabolism
  • Membrane Fusion
  • Membrane Proteins / chemistry
  • Membrane Proteins / genetics
  • Membrane Proteins / metabolism
  • Mitochondrial Dynamics
  • Mitochondrial Membranes / metabolism
  • Mitochondrial Proteins* / chemistry
  • Mitochondrial Proteins* / genetics
  • Mitochondrial Proteins* / metabolism
  • Molecular Dynamics Simulation*
  • Protein Binding
  • Protein Domains
  • Saccharomyces cerevisiae Proteins* / chemistry
  • Saccharomyces cerevisiae Proteins* / genetics
  • Saccharomyces cerevisiae Proteins* / metabolism
  • Saccharomyces cerevisiae* / genetics
  • Saccharomyces cerevisiae* / metabolism

Substances

  • Saccharomyces cerevisiae Proteins
  • FZO1 protein, S cerevisiae
  • Lysine
  • Mitochondrial Proteins
  • GTP Phosphohydrolases
  • Membrane Proteins
  • UGO1 protein, S cerevisiae