Virgibacillus tibetensis sp. nov., isolated from salt lake on the Tibetan plateau of China

Int J Syst Evol Microbiol. 2024 Sep;74(9):006525. doi: 10.1099/ijsem.0.006525.

Abstract

One bacterial strain, designated as C22-A2T, was isolated from Lake LungmuCo in Tibet. Cells of strain C22-A2T were long rod-shaped, Gram-stain-negative, non-spore-forming, with positive catalase and oxidase activity. Optimal growth occurred at 20-25 °C, pH 8.0 and with 3.0-7.0% (w/v) NaCl. Phylogenetic analysis of 16S rRNA gene and whole genome sequences revealed that strain C22-A2T belonged to the genus Virgibacillus, showing the highest 16S rRNA gene similarity to Virgibacillus halodenitrificans DSM 10037T (97.6%). The average nucleotide identity values between strain C22-A2T and the type strains of related species in the genus Virgibacillus were less than 74.4% and the digital DNA-DNA hybridization values were less than 20.2%, both below the species delineation thresholds of 95 and 70% respectively. The genome analysis revealed that strain C22-A2T harboured genes responsible for osmotic and oxidative stress, enabling it to adapt to its surrounding environment. In terms of biochemical and physiological characteristics, strain C22-A2T shared similar characteristics with the genus Virgibacillus, including the predominant cellular fatty acid anteiso-C15 : 0, the major respiratory quinone MK-7, as well as the polar lipids phosphatidylglycerol and diphosphatidylglycerol. Based on the comprehensive analysis of phylogenetic, phylogenomic, morphological, physiological and biochemical characteristics, strain C22-A2T is proposed to represent a novel species of the genus Virgibacillus, named as Virgibacillus tibetensis sp. nov. (=CGMCC 1.19202T=KCTC 43426T).

Keywords: Bacillaceae; Tibetan Plateau; Virgibacillus; salt lake.

MeSH terms

  • Bacterial Typing Techniques*
  • Base Composition*
  • DNA, Bacterial* / genetics
  • Fatty Acids*
  • Genome, Bacterial
  • Lakes* / microbiology
  • Nucleic Acid Hybridization*
  • Phospholipids / analysis
  • Phylogeny*
  • RNA, Ribosomal, 16S* / genetics
  • Sequence Analysis, DNA*
  • Sodium Chloride / metabolism
  • Tibet
  • Virgibacillus* / classification
  • Virgibacillus* / genetics
  • Virgibacillus* / isolation & purification
  • Vitamin K 2 / analogs & derivatives
  • Vitamin K 2 / analysis
  • Whole Genome Sequencing

Substances

  • RNA, Ribosomal, 16S
  • Fatty Acids
  • DNA, Bacterial
  • Sodium Chloride
  • Vitamin K 2
  • Phospholipids