miRNA-mediated gene silencing in Drosophila larval development involves GW182-dependent and independent mechanisms

EMBO J. 2024 Dec;43(23):6161-6179. doi: 10.1038/s44318-024-00249-4. Epub 2024 Sep 25.

Abstract

MicroRNAs (miRNAs) regulate a wide variety of biological processes by silencing their target genes. Argonaute (AGO) proteins load miRNAs to form an RNA-induced silencing complex (RISC), which mediates translational repression and/or mRNA decay of the targets. A scaffold protein called GW182 directly binds AGO and the CCR4-NOT deadenylase complex, initiating the mRNA decay reaction. Although previous studies have demonstrated the critical role of GW182 in cultured cells as well as in cell-free systems, its biological significance in living organisms remains poorly explored, especially in Drosophila melanogaster. Here, we generated gw182-null flies using the CRISPR/Cas9 system and found that, unexpectedly, they can survive until an early second-instar larval stage. Moreover, in vivo miRNA reporters can be effectively repressed in gw182-null first-instar larvae. Nevertheless, gw182-null flies have defects in the expression of chitin-related genes and the formation of the larval trachea system, preventing them from completing larval development. Our results highlight the importance of both GW182-dependent and -independent silencing mechanisms in vivo.

Keywords: Drosophila melanogaster; Development; GW182; Gene Silencing; MicroRNA.

MeSH terms

  • Animals
  • Argonaute Proteins / genetics
  • Argonaute Proteins / metabolism
  • CRISPR-Cas Systems
  • Drosophila Proteins* / genetics
  • Drosophila Proteins* / metabolism
  • Drosophila melanogaster* / genetics
  • Drosophila melanogaster* / growth & development
  • Drosophila melanogaster* / metabolism
  • Gene Expression Regulation, Developmental
  • Gene Silencing
  • Larva* / genetics
  • Larva* / growth & development
  • Larva* / metabolism
  • MicroRNAs* / genetics
  • MicroRNAs* / metabolism
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism

Substances

  • Drosophila Proteins
  • MicroRNAs
  • Argonaute Proteins
  • Gw protein, Drosophila
  • RNA-Binding Proteins