A Novel Pathogenic Large Duplication in EXT1 Identified in a Family with Multiple Osteochondromas

Genes (Basel). 2024 Sep 5;15(9):1169. doi: 10.3390/genes15091169.

Abstract

Multiple osteochondromas (MO) is an autosomal dominant disorder and the most common genetic skeletal dysplasia, characterized by the growth of bone outgrowths capped by cartilage, called osteochondromas. Most MO cases are caused by mutations in the exostosin-1 (EXT1) and exostosin-2 (EXT2) genes. Only 5% of MO-causative variants are represented by single or multiple exon deletions; to date, no pathogenic large duplication has been described in the literature. In the present study, we describe the novel in-tandem intragenic duplication c.(1128_1202)_(1284+29_1344)dup involving exon 4 of EXT1 (NM_000127.2), detected in a three-generation family with MO. The variant has been detected by MLPA (multiplex ligation-dependent probe amplification) and then confirmed with qPCR (quantitative PCR). Our finding expands the spectrum of MO-causing variants describing a pathogenic large duplication, underlying the importance of quantitative analysis in patients with negative sequencing.

Keywords: EXT1; large duplication; multiple osteochondromas.

Publication types

  • Case Reports

MeSH terms

  • Adult
  • Exons / genetics
  • Exostoses, Multiple Hereditary* / genetics
  • Exostoses, Multiple Hereditary* / pathology
  • Female
  • Gene Duplication*
  • Humans
  • Male
  • N-Acetylglucosaminyltransferases* / genetics
  • Pedigree*

Substances

  • exostosin-1
  • N-Acetylglucosaminyltransferases

Grants and funding

This research was supported by the Italian Ministry of Health—5 × 1000 2022 redditi 2021 (5M-2022-23685321 Studio di nuovi meccanismi patogenetici alla base delle patologie muscoloscheletriche).