Disentangling the Regulatory Response of Agrobacterium tumefaciens CHLDO to Glyphosate for Engineering Whole-Cell Phosphonate Biosensors

ACS Synth Biol. 2024 Oct 18;13(10):3430-3445. doi: 10.1021/acssynbio.4c00497. Epub 2024 Sep 30.

Abstract

Phosphonates (PHTs), organic compounds with a stable C-P bond, are widely distributed in nature. Glyphosate (GP), a synthetic PHT, is extensively used in agriculture and has been linked to various human health issues and environmental damage. Given the prevalence of GP, developing cost-effective, on-site methods for GP detection is key for assessing pollution and reducing exposure risks. We adopted Agrobacterium tumefaciens CHLDO, a natural GP degrader, as a host and the source of genetic parts for constructing PHT biosensors. In this bacterial species, the phn gene cluster, encoding the C-P lyase pathway, is regulated by the PhnF transcriptional repressor. We selected the phnG promoter, which displays a dose-dependent response to GP, to build a set of whole-cell biosensors. Through stepwise genetic optimization of the transcriptional cascade, we created a whole-cell biosensor capable of detecting GP in the 0.25-50 μM range in various samples, including soil and water.

Keywords: agrobacterium; biodegradation; glyphosate; metabolic engineering; synthetic biology; whole-cell biosensor.

MeSH terms

  • Agrobacterium tumefaciens* / genetics
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Biosensing Techniques* / methods
  • Glycine* / analogs & derivatives
  • Glycine* / metabolism
  • Glycine* / pharmacology
  • Glyphosate*
  • Lyases
  • Multigene Family
  • Organophosphonates* / metabolism
  • Promoter Regions, Genetic / genetics

Substances

  • Glyphosate
  • Glycine
  • Organophosphonates
  • Bacterial Proteins
  • carbon-phosphorus lyase
  • Lyases