Genome-Wide Analysis and Expression Profiling of Glyoxalase Gene Families Under Abiotic Stresses in Cucumber (Cucumis sativus L.)

Int J Mol Sci. 2024 Oct 20;25(20):11294. doi: 10.3390/ijms252011294.

Abstract

The glyoxalase pathway, consisting of glyoxalase I (GLYI) and glyoxalase II (GLYII), is an enzymatic system that converts cytotoxic methylglyoxal to non-toxic S-D-lactoylglutathione. Although the GLY gene family has been analyzed in Arabidopsis, rice, grape, cabbage, and soybean, cucumber studies are lacking. Here, we analyzed the cucumber GLY gene family, identifying 13 CsGLYI and 2 CsGLYII genes. Furthermore, we investigated the physicochemical properties, phylogenetic relationships, chromosomal localization and colinearity, gene structure, conserved motifs, cis-regulatory elements, and protein-protein interaction networks of the CsGLY family. They were primarily localized in the cytoplasm, chloroplasts, and mitochondria, with a minor presence in the nucleus. The classification of CsGLYI and CsGLYII genes into five classes closely resembled the homologous genes in Arabidopsis and soybean. Additionally, hormone-responsive elements dominated the promoter region of GLY genes, alongside light- and stress-responsive elements. The predicted interaction proteins of CsGLYIs and CsGLYIIs exerted a significant role in cellular respiration, amino acid synthesis, and metabolism, as well as methylglyoxal catabolism. In addition, the expression profiles of GLY genes were distinct in different tissues of cucumber as well as under diverse abiotic stresses. This study is conducive to the further exploration of the functional diversity among glyoxalase genes and the mechanisms of stress responses in cucumber.

Keywords: abiotic stress; cucumber; genome-wide identification; glyoxalase.

MeSH terms

  • Cucumis sativus* / enzymology
  • Cucumis sativus* / genetics
  • Gene Expression Profiling
  • Gene Expression Regulation, Plant*
  • Genome, Plant
  • Genome-Wide Association Study
  • Lactoylglutathione Lyase* / genetics
  • Lactoylglutathione Lyase* / metabolism
  • Multigene Family*
  • Phylogeny*
  • Plant Proteins / genetics
  • Plant Proteins / metabolism
  • Stress, Physiological* / genetics
  • Thiolester Hydrolases / genetics
  • Thiolester Hydrolases / metabolism

Substances

  • Lactoylglutathione Lyase
  • Thiolester Hydrolases
  • hydroxyacylglutathione hydrolase
  • Plant Proteins