Protein degradation of antizyme depends on the N-terminal degrons

Protein Sci. 2024 Nov;33(11):e5199. doi: 10.1002/pro.5199.

Abstract

Antizyme (AZ) is a regulatory protein that plays a crucial role in modulating the activity of ornithine decarboxylase (ODC), which is the initial and rate-limiting enzyme in the complex pathway of polyamine biosynthesis. AZ facilitates the swift degradation of ODC, thereby modulating the levels of cellular polyamines. This study unveils a new ubiquitin-independent mechanism for AZ degradation, emphasizing the essential role of N-terminal degrons. Contrary to traditional ubiquitin-dependent degradation, our findings reveal that AZ degradation is significantly influenced by its N-terminal region. By conducting a series of experiments, including in vitro degradation assays, cycloheximide chase experiments, differential scanning calorimetry, and measurement of cellular concentrations of polyamines, we demonstrate that N-terminal truncation significantly enhances AZ's stability and facilitates the reduction of polyamine levels by accelerating ODC degradation. The removal of the N-terminal portion of AZ results in a reduced degradation rate and enhanced thermal stability of the protein, leading to a more efficient inhibition of polyamine synthesis. These findings are corroborated by the analysis of AZ isoforms, AZ1, AZ2, and AZ3, which display differential degradation patterns based on the specific N-terminal segments. This substantiates a degradation mechanism driven by an intrinsically disordered N-terminal region acting as a degron, independent of lysine ubiquitination. These results underscore the significant regulatory function of the N-terminal domain in the activity of AZ and the maintenance of polyamine homeostasis.

Keywords: N‐terminal degron; antizyme degradation; ornithine decarboxylase; polyamine biosynthesis; protein stability; ubiquitin‐independent pathway.

MeSH terms

  • Degrons
  • Humans
  • Ornithine Decarboxylase / chemistry
  • Ornithine Decarboxylase / metabolism
  • Polyamines / chemistry
  • Polyamines / metabolism
  • Protein Stability
  • Proteins / chemistry
  • Proteins / metabolism
  • Proteolysis*

Substances

  • ornithine decarboxylase antizyme
  • Ornithine Decarboxylase
  • Proteins
  • Polyamines