The strength of interspecies interaction in a microbial community determines its susceptibility to invasion

PLoS Biol. 2024 Nov 7;22(11):e3002889. doi: 10.1371/journal.pbio.3002889. eCollection 2024 Nov.

Abstract

Previous work shows that a host's resident microbial community can provide resistance against an invading pathogen. However, this community is continuously changing over time due to adaptive mutations, and how these changes affect the invasion resistance of these communities remains poorly understood. To address this knowledge gap, we used an experimental evolution approach in synthetic communities of Escherichia coli and Salmonella Typhimurium to investigate how the invasion resistance of this community against a bacterium expressing a virulent phenotype, i.e., colicin secretion, changes over time. We show that evolved communities accumulate mutations in genes involved in carbon metabolism and motility, while simultaneously becoming less resistant to invasion. By investigating two-species competitions and generating a three-species competition model, we show that this outcome is dependent on the strength of interspecies interactions. Our study demonstrates how adaptive changes in microbial communities can make them more prone to the detrimental effects of an invading species.

MeSH terms

  • Colicins / genetics
  • Colicins / metabolism
  • Escherichia coli* / genetics
  • Escherichia coli* / metabolism
  • Microbial Interactions* / physiology
  • Microbiota / physiology
  • Mutation*
  • Salmonella typhimurium* / genetics
  • Salmonella typhimurium* / pathogenicity
  • Salmonella typhimurium* / physiology

Substances

  • Colicins

Grants and funding

This work was funded by the Swedish Research Council's Starting Grant 2021-04831 awarded to OMW and the Swedish Research Council's Research Grant 2021-02091 awarded to DIA. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.