Challenging a decades-old paradigm: ProB and ProA do not channel the unstable intermediate in proline synthesis after all

Proc Natl Acad Sci U S A. 2024 Nov 12;121(46):e2413673121. doi: 10.1073/pnas.2413673121. Epub 2024 Nov 8.

Abstract

The pathway for synthesis of proline in most forms of life produces a highly unstable intermediate, γ-L-glutamyl 5-phosphate (GP). For nearly 70 y, channeling of this intermediate from the active site of glutamate 5-kinase to the active site of GP reductase has been believed to protect GP from cyclization to a dead-end product. However, the evidence presented in support of this idea is not conclusive. We show that changes in the structures of the kinase or reductase that should preclude a protein-protein interaction do not compromise proline synthesis in Escherichia coli, demonstrating that channeling does not occur. We calculate that the half-life of GP is 320 ms. Although GP is indeed unstable, it should diffuse the length of an E. coli cell in less than 3 ms. Thus, most GP produced by glutamate 5-kinase should encounter the active site of GP reductase before cyclization occurs.

Keywords: ProA; ProB; channeling; proline synthesis; γ-glutamyl phosphate.

MeSH terms

  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Catalytic Domain
  • Escherichia coli Proteins* / genetics
  • Escherichia coli Proteins* / metabolism
  • Escherichia coli* / genetics
  • Escherichia coli* / metabolism
  • Phosphotransferases (Carboxyl Group Acceptor) / genetics
  • Phosphotransferases (Carboxyl Group Acceptor) / metabolism
  • Proline* / biosynthesis
  • Proline* / metabolism

Substances

  • Proline
  • Escherichia coli Proteins
  • glutamate 5-kinase
  • Bacterial Proteins
  • Phosphotransferases (Carboxyl Group Acceptor)