The complete genome sequence of proteases-producing Shewanella sp. H8 isolated from Antarctica

Mar Genomics. 2024 Dec:78:101147. doi: 10.1016/j.margen.2024.101147. Epub 2024 Oct 10.

Abstract

Bacteria of the genus Shewanella in the class Gammaproteobacteria are widely distributed in marine environments. Shewanella sp. H8, was isolated from a red algae sample collected from Nelson Island, Antarctica. Here, we present the complete genome sequence of strain H8, which consists of a single circular chromosome comprising 4,490,743 nucleotides with 40.59 % G + C content without any plasmid. In total, 3983 protein coding genes, 95 tRNA genes, and 25 rRNA genes were obtained. Genomic analysis of strain H8 showed that it contains four cold shock proteins and three fatty acid desaturases and possesses the potential to synthesize hglE-KS, arylpolyene, betalactone and RiPP-like compounds. Through genomic annotation, 91 protease-encoding genes were identified within the genome of strain H8. These proteases are classified into six categories based on their catalytic types. Among these proteases, metalloproteinases and serine proteases are dominant. These proteases may provide carbon and nitrogen sources to H8 by degrading proteins in the environment. This study will provide potential genetic information for the future research and development of cold-adapted proteases.

Keywords: Antarctica; Genomic analysis; Proteases; Shewanella sp. H8.

MeSH terms

  • Antarctic Regions
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Genome, Bacterial*
  • Peptide Hydrolases* / genetics
  • Peptide Hydrolases* / metabolism
  • Shewanella* / enzymology
  • Shewanella* / genetics
  • Whole Genome Sequencing*

Substances

  • Peptide Hydrolases
  • Bacterial Proteins