Entropy-driven self-assembled enzyme-DNA nanomatrix cascade DNAzyme-CRISPR/cas system for multiplexed enhancement of self-powered sensing platform for protein detection

Int J Biol Macromol. 2024 Dec;282(Pt 6):137536. doi: 10.1016/j.ijbiomac.2024.137536. Epub 2024 Nov 10.

Abstract

Clustered Regularly Interspaced Short Palindromic Repeats and CRISPR-associated Proteins (CRISPR/Cas) system can accurately identify and cleave target DNA sequences, while the effective combination of DNA nanomatrix and entropy-driven self-assembled enzymes can significantly enhance the sensitivity, stability, and diversified functionality of sensors through highly ordered molecular arrangement and spontaneous efficient assembly processes. Herein, a carbon-encapsulated MoS2 hollow nanorod (C-MoS2) with excellent conductivity and multiple active sites is used to construct bioanode of biofuel cell by integrating it with an entropy-driven self-assembled enzyme-DNA nanomatrix cascade DNAzyme-CRISPR/Cas system. When thrombin binds aptamer, it exposes the trigger strand on the anode, initiating chain displacement. This activates DNAzyme, triggering a cascade reaction that cleaves and releases the probe strand. The probe then binds CrRNA, forming a multimeric complex with Cas protein.When non-specific cleavage of the single strand occurs, it leads to the release of glucose oxidase (GOD) from the DNA matrix and causes a significant decrease in the value of the system's open-circuit voltage (EOCV). The EOCV values show a good negative correlation with the concentration of thrombin (TB) in the range of 0.00001-100 nM, achieving a limit of detection of 3.55 fM (S/N = 3).

Keywords: C-MoS(2) hollow nanorods; CRISPR/Cas system; Entropy-driven self-assembly enzyme.

MeSH terms

  • Aptamers, Nucleotide / chemistry
  • Biosensing Techniques* / methods
  • CRISPR-Cas Systems*
  • DNA / chemistry
  • DNA / genetics
  • DNA / metabolism
  • DNA, Catalytic* / chemistry
  • DNA, Catalytic* / metabolism
  • Entropy*
  • Glucose Oxidase* / chemistry
  • Glucose Oxidase* / metabolism
  • Nanotubes / chemistry
  • Thrombin* / analysis
  • Thrombin* / metabolism

Substances

  • DNA, Catalytic
  • Glucose Oxidase
  • Thrombin
  • DNA
  • Aptamers, Nucleotide