STK19 drives transcription-coupled repair by stimulating repair complex stability, RNA Pol II ubiquitylation, and TFIIH recruitment

Mol Cell. 2024 Dec 19;84(24):4740-4757.e12. doi: 10.1016/j.molcel.2024.10.030. Epub 2024 Nov 14.

Abstract

Transcription-coupled nucleotide excision repair (TC-NER) efficiently eliminates DNA damage that impedes gene transcription by RNA polymerase II (RNA Pol II). TC-NER is initiated by the recognition of lesion-stalled RNA Pol II by CSB, which recruits the CRL4CSA ubiquitin ligase and UVSSA. RNA Pol II ubiquitylation at RPB1-K1268 by CRL4CSA serves as a critical TC-NER checkpoint, governing RNA Pol II stability and initiating DNA damage excision by TFIIH recruitment. However, the precise regulatory mechanisms of CRL4CSA activity and TFIIH recruitment remain elusive. Here, we reveal human serine/threonine-protein kinase 19 (STK19) as a TC-NER factor, which is essential for correct DNA damage removal and subsequent transcription restart. Cryogenic electron microscopy (cryo-EM) studies demonstrate that STK19 is an integral part of the RNA Pol II-TC-NER complex, bridging CSA, UVSSA, RNA Pol II, and downstream DNA. STK19 stimulates TC-NER complex stability and CRL4CSA activity, resulting in efficient RNA Pol II ubiquitylation and correct UVSSA and TFIIH binding. These findings underscore the crucial role of STK19 as a core TC-NER component.

Keywords: CSA; CSB; DNA damage; DNA repair; RNA polymerase II; STK19; TC-NER; TFIIH; UVSSA; transcription-coupled nucleotide excision repair.

MeSH terms

  • Carrier Proteins
  • Cryoelectron Microscopy
  • DNA Damage*
  • DNA Helicases / genetics
  • DNA Helicases / metabolism
  • DNA Repair Enzymes / genetics
  • DNA Repair Enzymes / metabolism
  • DNA Repair*
  • Excision Repair
  • HEK293 Cells
  • HeLa Cells
  • Humans
  • Poly-ADP-Ribose Binding Proteins / genetics
  • Poly-ADP-Ribose Binding Proteins / metabolism
  • Protein Serine-Threonine Kinases* / genetics
  • Protein Serine-Threonine Kinases* / metabolism
  • RNA Polymerase II* / genetics
  • RNA Polymerase II* / metabolism
  • Receptors, Interleukin-17
  • Transcription Factor TFIIH* / genetics
  • Transcription Factor TFIIH* / metabolism
  • Transcription, Genetic*
  • Ubiquitination*

Substances

  • RNA Polymerase II
  • Transcription Factor TFIIH
  • Protein Serine-Threonine Kinases
  • UVSSA protein, human
  • DNA Helicases
  • DNA Repair Enzymes
  • IL17RB protein, human
  • Poly-ADP-Ribose Binding Proteins
  • ERCC6 protein, human
  • Carrier Proteins
  • Receptors, Interleukin-17