Bacterial 5' UTR: A treasure-trove for post-transcriptional regulation

Biotechnol Adv. 2025 Jan-Feb:78:108478. doi: 10.1016/j.biotechadv.2024.108478. Epub 2024 Nov 17.

Abstract

In bacteria, where gene transcription and translation occur concurrently, post-transcriptional regulation is acknowledged to be effective and precise. The 5' untranslated regions (5' UTRs) typically harbor diverse post-transcriptional regulatory elements, like riboswitches, RNA thermometers, small RNAs, and upstream open reading frames, that serve to modulate transcription termination, translation initiation, and mRNA stability. Consequently, exploring 5' UTR-derived regulatory elements is vital for synthetic biology and metabolic engineering. Over the past few years, the investigation of successive mechanisms has facilitated the development of various genetic tools from bacterial 5' UTRs. This review consolidates current understanding of 5' UTR regulatory functions, presents recent progress in 5' UTR-element design and screening, updates the tools and regulatory strategies developed, and highlights the challenges and necessity of establishing reliable bioinformatic analysis methods and non-model bacterial chassis in the future.

Keywords: Post-transcription; Regulation; Transcription; Translation; UTR; mRNA stability.

Publication types

  • Review

MeSH terms

  • 5' Untranslated Regions* / genetics
  • Bacteria* / genetics
  • Bacteria* / metabolism
  • Gene Expression Regulation, Bacterial / genetics
  • RNA Processing, Post-Transcriptional / genetics
  • RNA, Bacterial / genetics
  • Riboswitch / genetics

Substances

  • 5' Untranslated Regions
  • Riboswitch
  • RNA, Bacterial