The peptide selectivity model: Interpreting NK cell KIR-HLA-I binding interactions and their associations to human diseases

Trends Immunol. 2024 Dec;45(12):959-970. doi: 10.1016/j.it.2024.10.006. Epub 2024 Nov 21.

Abstract

Combinations of the highly polymorphic KIR and HLA-I genes are associated with numerous human diseases. Interpreting these associations requires a molecular understanding of the multiple killer-cell immunoglobulin-like receptor (KIR)-human leukocyte antigen-1 (HLA-I) receptor-ligand interactions on natural killer (NK) cells and identifying the salient features that underlie disease risk. We hypothesize that a critical discriminating factor in KIR-HLA-I interactions is the selective detection of HLA-I-bound peptides by KIRs. We propose a 'peptide selectivity model', where high-avidity KIR-HLA-I interactions reflect low selectivity for peptides conferring consistent NK cell inhibition across different tissue immunopeptidomes. Conversely, lower-avidity interactions (including those with activating KIRs) are more dependent on HLA-I-bound peptide sequence, requiring an appreciation of how HLA-I immunopeptidomes influence KIR binding and regulate NK cell function. Relevant to understanding NK cell function and pathology, we interpret known KIR-HLA-I combinations and their associations with certain human diseases in the context of this 'peptide selectivity model'.

Keywords: HLA-I; KIR; NK cell; peptide; peptide-selectivity model.

MeSH terms

  • Animals
  • HLA Antigens / immunology
  • HLA Antigens / metabolism
  • Histocompatibility Antigens Class I* / immunology
  • Histocompatibility Antigens Class I* / metabolism
  • Humans
  • Killer Cells, Natural* / immunology
  • Killer Cells, Natural* / metabolism
  • Peptides* / immunology
  • Peptides* / metabolism
  • Protein Binding*
  • Receptors, KIR* / immunology
  • Receptors, KIR* / metabolism

Substances

  • Histocompatibility Antigens Class I
  • HLA Antigens
  • Peptides
  • Receptors, KIR