Oxidative Deformylation of the Predominant DNA Lesion 5-Formyl-2'-deoxyuridine

Chem Res Toxicol. 2024 Dec 16;37(12):2032-2039. doi: 10.1021/acs.chemrestox.4c00410. Epub 2024 Dec 2.

Abstract

Radical oxidation of DNA gives rise to potentially deleterious lesions such as strand breaks and various nucleobase modifications including 5-formyl-2'-deoxyuridine (5-fo-dU), a prevalent product derived from the oxidation of the C5-methyl group of thymidine. The present study investigates the unusual transformation of 5-fo-dU into 5-hydroxy-2'-deoxyuridine (5-oh-dU) and 5,6-dihydroxy-5,6-dihydro-2'-deoxuridine (gly-dU), two products typically associated with the oxidation of 2'-deoxycytidine. Detailed mechanistic analyses reveal that hydrogen peroxide, either generated as a byproduct of ascorbate autoxidation or added exogenously, mediates the formation of these oxidatively induced C5-dealkylated products. We show that the major product 5-oh-dU results from a Baeyer-Villiger rearrangement of the formyl functionality of 5-fo-dU while the minor product gly-dU derives from α,β-oxidation of the enal portion followed by deformylation. These reactions were observed in both 2'-deoxynucleoside monomers as well as isolated DNA. Our findings further clarify the oxidation chemistry of thymidine and highlight a novel oxidative decomposition pathway that can help understand the fate of certain types of DNA damage. Furthermore, our results underscore the pro-oxidant properties of ascorbate in vitro that can lead to the adventitious oxidation of substrates via the reduction of trace metals ions and generation of hydrogen peroxide.

MeSH terms

  • DNA / chemistry
  • DNA / metabolism
  • DNA Damage*
  • Deoxyuridine* / analogs & derivatives
  • Deoxyuridine* / chemistry
  • Hydrogen Peroxide* / chemistry
  • Oxidation-Reduction*

Substances

  • Deoxyuridine
  • Hydrogen Peroxide
  • 5-formyl-2'-deoxyuridine
  • DNA