SARS-CoV-2 N protein recruits G3BP to double membrane vesicles to promote translation of viral mRNAs

Nat Commun. 2024 Dec 5;15(1):10607. doi: 10.1038/s41467-024-54996-3.

Abstract

Ras-GTPase-activating protein SH3-domain-binding proteins (G3BP) are critical for the formation of stress granules (SGs) through their RNA- and ribosome-binding properties. SARS-CoV-2 nucleocapsid (N) protein exhibits strong binding affinity for G3BP and inhibits infection-induced SG formation soon after infection. To study the impact of the G3BP-N interaction on viral replication and pathogenesis in detail, we generated a mutant SARS-CoV-2 (RATA) that specifically lacks the G3BP-binding motif in the N protein. RATA triggers a stronger and more persistent SG response in infected cells, showing reduced replication across various cell lines, and greatly reduced pathogenesis in K18-hACE2 transgenic mice. At early times of infection, G3BP and WT N protein strongly colocalise with dsRNA and with non-structural protein 3 (nsp3), a component of the pore complex in double membrane vesicles (DMVs) from which nascent viral RNA emerges. Furthermore, G3BP-N complexes promote highly localized translation of viral mRNAs in the immediate vicinity of the DMVs and thus contribute to efficient viral gene expression and replication. In contrast, G3BP is absent from the DMVs in cells infected with RATA and translation of viral mRNAs is less efficient. This work provides a fuller understanding of the multifunctional roles of G3BP in SARS-CoV-2 infection.

MeSH terms

  • Animals
  • COVID-19* / metabolism
  • COVID-19* / virology
  • Chlorocebus aethiops
  • Coronavirus Nucleocapsid Proteins* / genetics
  • Coronavirus Nucleocapsid Proteins* / metabolism
  • DNA Helicases / genetics
  • DNA Helicases / metabolism
  • HEK293 Cells
  • Humans
  • Mice
  • Mice, Transgenic
  • Phosphoproteins / genetics
  • Phosphoproteins / metabolism
  • Poly-ADP-Ribose Binding Proteins* / genetics
  • Poly-ADP-Ribose Binding Proteins* / metabolism
  • Protein Binding
  • Protein Biosynthesis*
  • RNA Helicases* / genetics
  • RNA Helicases* / metabolism
  • RNA Recognition Motif Proteins* / genetics
  • RNA Recognition Motif Proteins* / metabolism
  • RNA, Messenger* / genetics
  • RNA, Messenger* / metabolism
  • RNA, Viral* / genetics
  • RNA, Viral* / metabolism
  • SARS-CoV-2* / genetics
  • SARS-CoV-2* / metabolism
  • SARS-CoV-2* / physiology
  • Stress Granules / metabolism
  • Vero Cells
  • Viral Nonstructural Proteins / genetics
  • Viral Nonstructural Proteins / metabolism
  • Virus Replication*

Substances

  • RNA Recognition Motif Proteins
  • RNA Helicases
  • G3BP1 protein, human
  • RNA, Viral
  • Coronavirus Nucleocapsid Proteins
  • Poly-ADP-Ribose Binding Proteins
  • RNA, Messenger
  • nucleocapsid phosphoprotein, SARS-CoV-2
  • Phosphoproteins
  • DNA Helicases
  • Viral Nonstructural Proteins