Warehouse-based, immunopeptidome-guided design of personalised peptide vaccines shows feasibility in clinical trial evaluation in CLL patients

Front Immunol. 2024 Nov 26:15:1482715. doi: 10.3389/fimmu.2024.1482715. eCollection 2024.

Abstract

Cancer peptide vaccination represents a promising therapeutic approach, but has been hampered by lack of suitable antigens and restricted applicability due to different HLA backgrounds of individual patients. We here introduce a novel warehouse-based concept for composition of personalized peptide vaccines and report on its successful application in a Phase II clinical trial in patients with chronic lymphocytic leukemia (CLL) after first-line therapy. 26 CLL patients in at least partial remission (PR) after 6 months of immuno-chemotherapy were vaccinated with a personalized vaccine compiled from a premanufactured peptide warehouse comprising immunopeptidome-defined CLL-associated peptides. Primary objective was evaluation of immunogenicity, secondary objectives were safety and minimal residual disease (MRD) response. Immunopeptidome-guided vaccine composition was throughout successful, proving the feasibility of warehouse-based vaccine design. Vaccination was well tolerated, with local injection site reactions being the most common adverse event. Only few patients showed vaccine-induced T cell responses, attributable to their inability to mount strong immune responses due to immune-chemotherapy and lack of potent adjuvant formulations. Both issues are addressed within a follow-up trial (NCT04688385), combining the immunopeptidome-guided warehouse-based vaccine design reported here with a potent novel adjuvant evaluating personalized multi- peptide vaccination in CLL patients under T cell supportive BTK inhibitor therapies.

Clinical trial registration: www.clinicaltrialsregister.eu, identifier NCT02802943.

Keywords: CLL; immunopeptidome; peptide; trial; vaccine; warehouse.

Publication types

  • Clinical Trial, Phase II

MeSH terms

  • Adult
  • Aged
  • Aged, 80 and over
  • Antigens, Neoplasm / immunology
  • Cancer Vaccines* / adverse effects
  • Cancer Vaccines* / immunology
  • Feasibility Studies
  • Female
  • Humans
  • Leukemia, Lymphocytic, Chronic, B-Cell* / immunology
  • Leukemia, Lymphocytic, Chronic, B-Cell* / therapy
  • Male
  • Middle Aged
  • Neoplasm, Residual
  • Precision Medicine*
  • Protein Subunit Vaccines
  • Vaccines, Subunit* / immunology

Substances

  • Cancer Vaccines
  • Vaccines, Subunit
  • Antigens, Neoplasm
  • Protein Subunit Vaccines

Associated data

  • ClinicalTrials.gov/NCT02802943

Grants and funding

The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. This clinical trial was supported by an AKF grant of the Medical Faculty of the University Tübingen (grant number 340-0-0). Furthermore, this work was supported by the Deutsche Forschungsgemeinschaft under Germany’s Excellence Strategy (Grant EXC2180-390900677, the German Cancer Consortium (DKTK), the Deutsche Krebshilfe (German Cancer Aid, 70114948 (JW), the Else Kröner, Fresenius Foundation (Grant 2022_EKSE.79), Invest BW Innovation grant (BW1_4064/03/TruVac), the Zentren für Personalisierte Medizin (ZPM, JW). The authors declare that this study received funding from Celgene, which supplied lenalidomide. The funder was not involved in the study design, collection, analysis, interpretation of data, the writing of this article or the decision to submit it for publication.