Radiogenomics Pilot Study: Association Between Radiomics and Single Nucleotide Polymorphism-Based Microarray Copy Number Variation in Diagnosing Renal Oncocytoma and Chromophobe Renal Cell Carcinoma

Int J Mol Sci. 2024 Nov 21;25(23):12512. doi: 10.3390/ijms252312512.

Abstract

RO and ChRCC are kidney tumours with overlapping characteristics, making differentiation between them challenging. The objective of this research is to create a radiogenomics map by correlating radiomic features to molecular phenotypes in ChRCC and RO, using resection as the gold standard. Fourteen patients (6 RO and 8 ChRCC) were included in the prospective study. A total of 1,875 radiomic features were extracted from CT scans, alongside 632 cytobands containing 16,303 genes from the genomic data. Feature selection algorithms applied to the radiomic features resulted in 13 key features. From the genomic data, 24 cytobands highly correlated with histology were selected and cross-correlated with the radiomic features. The analysis identified four radiomic features that were strongly associated with seven genomic features. These findings demonstrate the potential of integrating radiomic and genomic data to enhance the differential diagnosis of RO and ChRCC, paving the way for more precise and non-invasive diagnostic tools in clinical practice.

Keywords: chromophobe; computed tomography; oncocytoma; radiogenomics; renal masses.

MeSH terms

  • Adenoma, Oxyphilic* / diagnostic imaging
  • Adenoma, Oxyphilic* / genetics
  • Adult
  • Aged
  • Carcinoma, Renal Cell* / diagnosis
  • Carcinoma, Renal Cell* / diagnostic imaging
  • Carcinoma, Renal Cell* / genetics
  • DNA Copy Number Variations* / genetics
  • Diagnosis, Differential
  • Female
  • Genomics / methods
  • Humans
  • Kidney Neoplasms* / diagnosis
  • Kidney Neoplasms* / diagnostic imaging
  • Kidney Neoplasms* / genetics
  • Male
  • Middle Aged
  • Pilot Projects
  • Polymorphism, Single Nucleotide*
  • Prospective Studies
  • Radiomics
  • Tomography, X-Ray Computed / methods

Supplementary concepts

  • Oncocytoma, renal

Grants and funding

This research received no external funding.