In silico study of bioactive compounds derived from Indonesian marine invertebrates as a novel antituberculosis agent

Turk J Med Sci. 2024 Sep 20;54(6):1399-1408. doi: 10.55730/1300-0144.5923. eCollection 2024.

Abstract

Background/aim: Tuberculosis (TB) has become the world's deadliest disease. The lack of an effective therapeutic drug to treat it is one of the obstacle for doctors. Today, multidrug-resistant TB cases are increasing. Investigating these new drug should be given intensive and careful consideration. Marine invertebrates are valuable since they produce a large number of active compounds, and screening of these active compounds is very important.

Materials and methods: Anti-TB screening of compounds derived from marine invertebrates was performed via the in silico method. Three-dimensional structures of pantothenate kinase (MtPanK type 1, PDB ID: 4BFT), Mycobacterium tuberculosis InhA (PDB ID: 2X23), protein kinase B (PDB ID: 5U94), and β-ketoacyl acyl carrier protein synthase I (MtKasA, PDB ID: 2WGE) were used as the protein targeted receptors.

Results: The molecular docking analysis showed that the potential candidate compounds with the lowest docking score were 19-hydroxypsammaplysin Q, 19-hydroxypsammaplysin S, psammaplysin L, and psammaplysin K dimethoxy acetal. Several compounds, such as molamide C and the manzamine group, are also potential anti-TB compounds.

Conclusion: This study showed that psammaplysin groups have potential as anti-TB compounds. Further laboratory experiments should be done to confirm the in silico data.

Keywords: Marine natural products; antituberculosis; molecular docking.

MeSH terms

  • Animals
  • Antitubercular Agents* / chemistry
  • Antitubercular Agents* / pharmacology
  • Aquatic Organisms / chemistry
  • Bacterial Proteins
  • Computer Simulation
  • Humans
  • Indonesia
  • Invertebrates / chemistry
  • Molecular Docking Simulation*
  • Mycobacterium tuberculosis* / drug effects
  • Oxidoreductases / metabolism

Substances

  • Antitubercular Agents
  • Bacterial Proteins
  • InhA protein, Mycobacterium
  • Oxidoreductases

Grants and funding

This research was funded by the Financial Ministry of Indonesia through the LPDP-RIIM 3 Program 2023–2024