Mitigating saturation effects in rice nitrogen estimation using Dualex measurements and machine learning

Front Plant Sci. 2024 Dec 16:15:1518272. doi: 10.3389/fpls.2024.1518272. eCollection 2024.

Abstract

Nitrogen is essential for rice growth and yield formation, but traditional methods for assessing nitrogen status are often labor-intensive and unreliable at high nitrogen levels due to saturation effects. This study evaluates the effectiveness of flavonoid content (Flav) and the Nitrogen Balance Index (NBI), measured using a Dualex sensor and combined with machine learning models, for precise nitrogen status estimation in rice. Field experiments involving 15 rice varieties under varying nitrogen application levels collected Dualex measurements of chlorophyll (Chl), Flav, and NBI from the top five leaves at key growth stages. Incremental analysis was performed to quantify saturation effects, revealing that chlorophyll measurements saturated at high nitrogen levels, limiting their reliability. In contrast, Flav and NBI remained sensitive across all nitrogen levels, accurately reflecting nitrogen status. Machine learning models, particularly random forest and extreme gradient boosting, achieved high prediction accuracy for leaf and plant nitrogen concentrations (R2 > 0.82), with SHAP analysis identifying NBI and Flav from the top two leaves as the most influential predictors. By combining Flav and NBI measurements with machine learning, this approach effectively overcomes chlorophyll-based saturation limitations, enabling precise nitrogen estimation across diverse conditions and offering practical solutions for improved nitrogen management in rice cultivation.

Keywords: Dualex measurements; SHAP analysis; incremental analysis; machine learning; nitrogen balance index; rice nitrogen estimation; saturation effect.

Grants and funding

The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. This research was funded by the Project of Jiangsu Vocational College of Agriculture and Forestry, China (No.2021kj15, 2022kj63), the National Natural Science Foundation of China (No. 32072681, 32101616, 32360530), Zhejiang Provincial Natural Science Foundation of China (No. LTGN23D010001), and the Frontier Project from the Institute of Soil Science, Chinese Academy of Sciences (ISSASIP2406).