Integrating machine learning with bioinformatics for predicting idiopathic pulmonary fibrosis prognosis: developing an individualized clinical prediction tool

Exp Biol Med (Maywood). 2024 Dec 23:249:10215. doi: 10.3389/ebm.2024.10215. eCollection 2024.

Abstract

Idiopathic pulmonary fibrosis (IPF) is a chronic interstitial lung disease with a poor prognosis. Its non-specific clinical symptoms make accurate prediction of disease progression challenging. This study aimed to develop molecular-level prognostic models to personalize treatment strategies for IPF patients. Using transcriptome sequencing and clinical data from 176 IPF patients, we developed a Random Survival Forest (RSF) model through machine learning and bioinformatics techniques. The model demonstrated superior predictive accuracy and clinical utility, as shown by the concordance index (C-index), the area under the operating characteristic curve (AUC), Brief scores, and decision curve analysis (DCA) curves. Additionally, a novel prognostic staging system was introduced to stratify IPF patients into distinct risk groups, enabling individualized predictions. The model's performance was validated using a bleomycin-induced pulmonary fibrosis mouse model. In conclusion, this study offers a new prognostic staging system and predictive tool for IPF, providing valuable insights for treatment and management.

Keywords: hub gene; idiopathic pulmonary fibrosis; machine learning; prediction model; random survival forest.

MeSH terms

  • Aged
  • Animals
  • Bleomycin
  • Computational Biology* / methods
  • Disease Models, Animal
  • Female
  • Humans
  • Idiopathic Pulmonary Fibrosis* / diagnosis
  • Idiopathic Pulmonary Fibrosis* / genetics
  • Idiopathic Pulmonary Fibrosis* / pathology
  • Machine Learning*
  • Male
  • Mice
  • Mice, Inbred C57BL
  • Middle Aged
  • Precision Medicine / methods
  • Prognosis
  • Transcriptome

Substances

  • Bleomycin

Grants and funding

The author(s) declare that no financial support was received for the research, authorship, and/or publication of this article.