Metabolically Modifying the Central and Competitive Metabolic Pathways for Enhanced D-Pantoic Acid Synthesis

J Agric Food Chem. 2025 Jan 22;73(3):2077-2087. doi: 10.1021/acs.jafc.4c10512. Epub 2025 Jan 8.

Abstract

D-Pantoic acid is an essential precursor for the synthesis of vitamin B5. However, the microbial synthesis of D-pantoic acid suffers from a low yield. Herein, to improve D-pantoic acid biosynthesis in Escherichia coli, the central metabolic and byproduct-forming pathways were first engineered, increasing the D-pantoic acid titer to 1.55 g/L from 0.75 g/L. Subsequently, the modification was focused on preventing the accumulation of α-ketoglutarate (α-KG). Six genes (ppc, mdh, icd, sucA, kgtP, and dcuA) related to α-KG metabolism and transport were screened by the CRISPRi system and further genetically manipulated. Ultimately, significantly improved D-pantoic acid biosynthesis (2.03 g/L in a shake flask and 14.78 g/L in a 5-L bioreactor) with dramatically reduced formation of byproducts was achieved. To our best knowledge, this is the first attempt to modify the key metabolic targets related to α-KG accumulation for enhanced D-pantoic acid biosynthesis. These findings would also offer valuable insights into the metabolic regulation of other related metabolites.

Keywords: CRISPRi; D-pantoic acid; E. coli; byproduct; α-ketoglutarate.

MeSH terms

  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism
  • Escherichia coli* / genetics
  • Escherichia coli* / metabolism
  • Ketoglutaric Acids / metabolism
  • Metabolic Engineering*
  • Metabolic Networks and Pathways*

Substances

  • Ketoglutaric Acids
  • Escherichia coli Proteins